Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G167100.1 | Wheat | nucleus | 98.38 | 98.38 |
| TraesCS6A01G138600.4 | Wheat | nucleus | 98.17 | 98.06 |
| HORVU6Hr1G026730.9 | Barley | nucleus | 94.07 | 93.86 |
| KRH58711 | Soybean | nucleus | 36.03 | 84.99 |
| Os02t0164900-01 | Rice | nucleus | 82.85 | 84.58 |
| EES04575 | Sorghum | nucleus | 80.8 | 82.22 |
| TraesCS7D01G449900.2 | Wheat | nucleus | 78.53 | 80.18 |
| Zm00001d053819_P002 | Maize | nucleus | 79.29 | 79.98 |
| GSMUA_Achr11P... | Banana | nucleus | 61.27 | 68.52 |
| GSMUA_Achr5P00590_001 | Banana | nucleus | 66.56 | 67.88 |
| VIT_10s0003g04100.t01 | Wine grape | nucleus | 65.8 | 67.18 |
| GSMUA_Achr6P19850_001 | Banana | nucleus | 60.73 | 65.85 |
| Bra010776.1-P | Field mustard | nucleus | 58.47 | 65.14 |
| CDY12048 | Canola | nucleus | 59.44 | 65.05 |
| CDX90245 | Canola | nucleus | 59.65 | 64.91 |
| CDY02285 | Canola | nucleus | 60.63 | 64.38 |
| KRH11131 | Soybean | nucleus | 62.24 | 64.25 |
| KRH21113 | Soybean | nucleus | 62.03 | 64.17 |
| CDY09598 | Canola | nucleus | 59.44 | 63.33 |
| KRH42603 | Soybean | nucleus | 60.73 | 62.21 |
| AT1G30330.3 | Thale cress | nucleus | 62.03 | 61.5 |
| TraesCS5D01G045700.2 | Wheat | nucleus | 59.01 | 60.78 |
| TraesCS2D01G548900.1 | Wheat | nucleus | 52.32 | 58.22 |
| TraesCS7D01G161900.1 | Wheat | nucleus | 45.52 | 39.62 |
| TraesCS2D01G307600.1 | Wheat | nucleus | 26.65 | 37.77 |
| TraesCS6D01G102300.1 | Wheat | nucleus | 42.18 | 34.63 |
| TraesCS7D01G250100.4 | Wheat | nucleus | 40.78 | 34.62 |
| TraesCS2D01G491200.2 | Wheat | nucleus | 35.17 | 34.14 |
| TraesCS3D01G434700.1 | Wheat | nucleus | 28.69 | 33.42 |
| TraesCS7D01G409700.1 | Wheat | nucleus | 42.29 | 33.36 |
| TraesCS3D01G442000.7 | Wheat | nucleus | 28.37 | 29.68 |
| TraesCS3D01G166700.1 | Wheat | nucleus | 24.16 | 29.55 |
Protein Annotations
| MapMan:15.5.5.1 | Gene3D:2.30.30.1040 | Gene3D:2.40.330.10 | Gene3D:3.10.20.90 | InterPro:AUX/IAA_dom | InterPro:Auxin_resp |
| InterPro:B3_DNA-bd | InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009725 |
| GO:GO:0009987 | InterPro:IPR000270 | InterPro:IPR003340 | InterPro:IPR015300 | InterPro:PB1_dom | PFAM:PF02309 |
| PFAM:PF02362 | PFAM:PF06507 | PFscan:PS50863 | PFscan:PS51745 | PANTHER:PTHR31384 | PANTHER:PTHR31384:SF22 |
| SMART:SM01019 | SUPFAM:SSF101936 | SUPFAM:SSF54277 | EnsemblPlantsGene:TraesCS6D01G127600 | EnsemblPlants:TraesCS6D01G127600.2 | TIGR:cd10017 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr6D:+:91517263..91522094
Molecular Weight (calculated)
102502.0 Da
IEP (calculated)
5.874
GRAVY (calculated)
-0.500
Length
927 amino acids
Sequence
(BLAST)
(BLAST)
001: MNLSPSAAAG GGLPDQPASP EVSEEHKCLN SELWHACAGP LVSLPAVGSR VLYFPQGHSE QVSASTNKEM ESQIPNYPNL PAQLICQLHN VTMHADAETD
101: EVYAQMTLQP LSPQELKDPF LPAELGNASK QPTNYFCKTL TASDTSTHGG FSVPRRAAEK VFPPLDFTQQ PPAQELMAKD LHGNEWKFRH IFRGQPKRHL
201: LTTGWSVFIS AKRLVAGDSV LFIWNDNNQL LLGIRRANRS QTVMPSSVLS SDSMHIGLLA AAAHAASTNS RFTIFYNPRA SPSEFVIPLA KYVKAVYHTR
301: ISVGMRFRML FETEESSVRR YMGTITGISD LDPARWPNSH WRSVKVGWDE STAGERQPRV SLWEIEPLTT YPMYSSPFPM RLKRPWPTGL PSLYGGKEDD
401: LTSSLMWLRD GANPGFQSFN FGGLGMSPWM QPRMDSSLLG LQPDMYQAMS AAAFQNTTKQ VSPTLLQFQQ PQNIAGRSAL LSSQILQQVQ PQFQEMHHQN
501: INDSAIQGHN QSEYLQQQLQ RCQSFNGQKS PPPQQQESHH QHQQQQSQCM QTPQHQQMQE QKHSPDFQCV PNGLLVFSQL SSTNQSPPST LQTVSAFSQQ
601: QNLQDRNISS LAPSNVPSMH DTLRPFPSEA GSNLQGVPRT TPVPVSDPWS SKRVAMESVI PSSSHVNSSH MQQLDSEPSN IPQSSSLAPL PGRECLVDQD
701: GNSDNQNHLL FGVNIDSQSL LMQGGIPSLQ EDNGCIASLQ DDNDSSTIPY STCNFLSPSQ NDFPLNEALA SSGCLDESGY ASFSENSDHV NQPTAAFVKV
801: YKSGAFGRLL DITKFSNYHE LRSEVGRLFG LEGQLEDPAR SGWQLVFVDR EDDILLVGDD PWQEFVNSVS CIKILTPQEV QQMGKQGIDL LSSAPARRLG
901: NSCDNYAGRQ ESRSLSTVIA SVGSVEF
101: EVYAQMTLQP LSPQELKDPF LPAELGNASK QPTNYFCKTL TASDTSTHGG FSVPRRAAEK VFPPLDFTQQ PPAQELMAKD LHGNEWKFRH IFRGQPKRHL
201: LTTGWSVFIS AKRLVAGDSV LFIWNDNNQL LLGIRRANRS QTVMPSSVLS SDSMHIGLLA AAAHAASTNS RFTIFYNPRA SPSEFVIPLA KYVKAVYHTR
301: ISVGMRFRML FETEESSVRR YMGTITGISD LDPARWPNSH WRSVKVGWDE STAGERQPRV SLWEIEPLTT YPMYSSPFPM RLKRPWPTGL PSLYGGKEDD
401: LTSSLMWLRD GANPGFQSFN FGGLGMSPWM QPRMDSSLLG LQPDMYQAMS AAAFQNTTKQ VSPTLLQFQQ PQNIAGRSAL LSSQILQQVQ PQFQEMHHQN
501: INDSAIQGHN QSEYLQQQLQ RCQSFNGQKS PPPQQQESHH QHQQQQSQCM QTPQHQQMQE QKHSPDFQCV PNGLLVFSQL SSTNQSPPST LQTVSAFSQQ
601: QNLQDRNISS LAPSNVPSMH DTLRPFPSEA GSNLQGVPRT TPVPVSDPWS SKRVAMESVI PSSSHVNSSH MQQLDSEPSN IPQSSSLAPL PGRECLVDQD
701: GNSDNQNHLL FGVNIDSQSL LMQGGIPSLQ EDNGCIASLQ DDNDSSTIPY STCNFLSPSQ NDFPLNEALA SSGCLDESGY ASFSENSDHV NQPTAAFVKV
801: YKSGAFGRLL DITKFSNYHE LRSEVGRLFG LEGQLEDPAR SGWQLVFVDR EDDILLVGDD PWQEFVNSVS CIKILTPQEV QQMGKQGIDL LSSAPARRLG
901: NSCDNYAGRQ ESRSLSTVIA SVGSVEF
0001: MKAPSNGFLP SSNEGEKKPI NSQLWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKQ TDFIPNYPNL PSKLICLLHS VTLHADTETD EVYAQMTLQP
0101: VNKYDREALL ASDMGLKLNR QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDTTWTFRH IYRGQPKRHL LTTGWSVFVS
0201: TKRLFAGDSV LFVRDEKSQL MLGIRRANRQ TPTLSSSVIS SDSMHIGILA AAAHANANSS PFTIFFNPRA SPSEFVVPLA KYNKALYAQV SLGMRFRMMF
0301: ETEDCGVRRY MGTVTGISDL DPVRWKGSQW RNLQVGWDES TAGDRPSRVS IWEIEPVITP FYICPPPFFR PKYPRQPGMP DDELDMENAF KRAMPWMGED
0401: FGMKDAQSSM FPGLSLVQWM SMQQNNPLSG SATPQLPSAL SSFNLPNNFA SNDPSKLLNF QSPNLSSANS QFNKPNTVNH ISQQMQAQPA MVKSQQQQQQ
0501: QQQQHQHQQQ QLQQQQQLQM SQQQVQQQGI YNNGTIAVAN QVSCQSPNQP TGFSQSQLQQ QSMLPTGAKM THQNINSMGN KGLSQMTSFA QEMQFQQQLE
0601: MHNSSQLLRN QQEQSSLHSL QQNLSQNPQQ LQMQQQSSKP SPSQQLQLQL LQKLQQQQQQ QSIPPVSSSL QPQLSALQQT QSHQLQQLLS SQNQQPLAHG
0701: NNSFPASTFM QPPQIQVSPQ QQGQMSNKNL VAAGRSHSGH TDGEAPSCST SPSANNTGHD NVSPTNFLSR NQQQGQAASV SASDSVFERA SNPVQELYTK
0801: TESRISQGMM NMKSAGEHFR FKSAVTDQID VSTAGTTYCP DVVGPVQQQQ TFPLPSFGFD GDCQSHHPRN NLAFPGNLEA VTSDPLYSQK DFQNLVPNYG
0901: NTPRDIETEL SSAAISSQSF GIPSIPFKPG CSNEVGGIND SGIMNGGGLW PNQTQRMRTY TKVQKRGSVG RSIDVTRYSG YDELRHDLAR MFGIEGQLED
1001: PLTSDWKLVY TDHENDILLV GDDPWEEFVN CVQNIKILSS VEVQQMSLDG DLAAIPTTNQ ACSETDSGNA WKVHYEDTSA AASFNR
0101: VNKYDREALL ASDMGLKLNR QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDTTWTFRH IYRGQPKRHL LTTGWSVFVS
0201: TKRLFAGDSV LFVRDEKSQL MLGIRRANRQ TPTLSSSVIS SDSMHIGILA AAAHANANSS PFTIFFNPRA SPSEFVVPLA KYNKALYAQV SLGMRFRMMF
0301: ETEDCGVRRY MGTVTGISDL DPVRWKGSQW RNLQVGWDES TAGDRPSRVS IWEIEPVITP FYICPPPFFR PKYPRQPGMP DDELDMENAF KRAMPWMGED
0401: FGMKDAQSSM FPGLSLVQWM SMQQNNPLSG SATPQLPSAL SSFNLPNNFA SNDPSKLLNF QSPNLSSANS QFNKPNTVNH ISQQMQAQPA MVKSQQQQQQ
0501: QQQQHQHQQQ QLQQQQQLQM SQQQVQQQGI YNNGTIAVAN QVSCQSPNQP TGFSQSQLQQ QSMLPTGAKM THQNINSMGN KGLSQMTSFA QEMQFQQQLE
0601: MHNSSQLLRN QQEQSSLHSL QQNLSQNPQQ LQMQQQSSKP SPSQQLQLQL LQKLQQQQQQ QSIPPVSSSL QPQLSALQQT QSHQLQQLLS SQNQQPLAHG
0701: NNSFPASTFM QPPQIQVSPQ QQGQMSNKNL VAAGRSHSGH TDGEAPSCST SPSANNTGHD NVSPTNFLSR NQQQGQAASV SASDSVFERA SNPVQELYTK
0801: TESRISQGMM NMKSAGEHFR FKSAVTDQID VSTAGTTYCP DVVGPVQQQQ TFPLPSFGFD GDCQSHHPRN NLAFPGNLEA VTSDPLYSQK DFQNLVPNYG
0901: NTPRDIETEL SSAAISSQSF GIPSIPFKPG CSNEVGGIND SGIMNGGGLW PNQTQRMRTY TKVQKRGSVG RSIDVTRYSG YDELRHDLAR MFGIEGQLED
1001: PLTSDWKLVY TDHENDILLV GDDPWEEFVN CVQNIKILSS VEVQQMSLDG DLAAIPTTNQ ACSETDSGNA WKVHYEDTSA AASFNR
Arabidopsis Description
ARF19Auxin response factor 19 [Source:UniProtKB/Swiss-Prot;Acc:Q8RYC8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.