CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58711	Soybean	nucleus	42.08	95.93
KRH11131	Soybean	nucleus	94.53	94.32
KRH42603	Soybean	nucleus	85.83	84.97
VIT_10s0003g04100.t01	Wine grape	nucleus	81.14	80.07
CDY02285	Canola	nucleus	72.21	74.11
CDY12048	Canola	nucleus	69.2	73.2
Bra010776.1-P	Field mustard	nucleus	67.97	73.2
CDX90245	Canola	nucleus	69.53	73.12
CDY09598	Canola	nucleus	70.98	73.1
GSMUA_Achr5P02450_001	Banana	nucleus	65.96	71.38
AT1G30330.3	Thale cress	nucleus	73.66	70.59
KRH73577	Soybean	nucleus	69.64	69.64
GSMUA_Achr3P23290_001	Banana	nucleus	63.5	69.39
GSMUA_Achr5P26580_001	Banana	nucleus	61.94	68.77
KRH14545	Soybean	nucleus	68.53	68.53
GSMUA_Achr5P00590_001	Banana	nucleus	68.53	67.55
GSMUA_Achr11P...	Banana	nucleus	67.63	66.37
GSMUA_Achr6P19850_001	Banana	nucleus	62.72	65.73
Os02t0164900-01	Rice	nucleus	66.52	65.64
TraesCS7D01G449900.2	Wheat	nucleus	66.41	65.53
GSMUA_Achr11P...	Banana	nucleus	60.6	65.5
TraesCS7A01G461700.1	Wheat	nucleus	66.41	65.46
TraesCS7B01G363100.1	Wheat	nucleus	66.29	65.35
EER90218	Sorghum	nucleus	66.52	64.85
Os06t0677800-01	Rice	nucleus	66.18	64.67
EES04575	Sorghum	nucleus	65.62	64.54
Zm00001d014377_P002	Maize	nucleus	65.62	64.12
HORVU7Hr1G106280.1	Barley	nucleus	66.29	63.33
HORVU6Hr1G026730.9	Barley	nucleus	64.84	62.54
Zm00001d053819_P002	Maize	nucleus	63.95	62.35
EES17392	Sorghum	nucleus	62.05	62.12
TraesCS6A01G138600.4	Wheat	nucleus	64.29	62.07
TraesCS6D01G127600.2	Wheat	nucleus	64.17	62.03
Zm00001d031064_P003	Maize	nucleus	61.72	61.65
TraesCS6B01G167100.1	Wheat	nucleus	63.73	61.6
TraesCS5B01G039800.1	Wheat	nucleus	60.83	61.17
KRH30740	Soybean	nucleus	57.59	61.14
Os12t0613700-01	Rice	nucleus	61.27	61.07
HORVU5Hr1G009650.20	Barley	nucleus	60.71	61.05
KRH72896	Soybean	nucleus	57.7	61.04
Zm00001d041497_P005	Maize	nucleus	60.49	61.04
TraesCS5D01G045700.2	Wheat	nucleus	61.16	60.89
KRH17251	Soybean	nucleus	57.25	60.85
TraesCS5A01G038300.2	Wheat	nucleus	61.05	60.85
KRG98044	Soybean	nucleus	56.92	60.64
Zm00001d036593_P001	Maize	plastid	64.96	60.62
KRH22924	Soybean	nucleus	18.3	44.93
KRH26266	Soybean	nucleus	28.46	38.35
KRH06026	Soybean	nucleus	28.46	38.35
KRH05923	Soybean	nucleus	39.4	37.83
KRH51289	Soybean	nucleus	28.46	37.83
KRH17404	Soybean	nucleus	38.95	37.53
KRH37536	Soybean	nucleus	47.1	37.51
KRH12587	Soybean	nucleus	46.43	37.08
KRH19355	Soybean	nucleus	46.76	37.05
KRH68924	Soybean	nucleus	27.34	37.01
KRH49135	Soybean	nucleus	27.34	36.9
KRH00001	Soybean	nucleus	27.34	36.9
KRH02575	Soybean	nucleus	46.76	36.88
KRH75716	Soybean	nucleus	28.35	36.71
KRH65922	Soybean	nucleus	28.12	36.47
KRH49070	Soybean	nucleus	44.31	35.77
KRH74145	Soybean	nucleus	43.75	35.51
KRH06451	Soybean	nucleus	28.24	35.34
KRH47893	Soybean	nucleus	28.24	35.34
KRH60117	Soybean	nucleus	42.97	35.03
KRH41404	Soybean	nucleus	42.3	34.05
KRG96367	Soybean	nucleus	25.11	33.23
KRH68102	Soybean	nucleus	21.43	32.54
KRH41062	Soybean	nucleus	30.58	32.2
KRH63855	Soybean	nucleus	30.25	32.15
KRG89021	Soybean	nucleus	28.24	31.94
KRH59742	Soybean	nucleus	30.58	31.93
KRH54110	Soybean	nucleus	29.91	31.79
KRH24914	Soybean	nucleus	27.9	31.57
KRH26391	Soybean	nucleus	27.12	30.41

Protein Annotations

EntrezGene:100798719	MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	EMBL:ACUP02008339
InterPro:AUX/IAA_dom	InterPro:Auxin_resp	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	EnsemblPlantsGene:GLYMA_13G221400	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725
GO:GO:0009734	GO:GO:0009987	UniProt:I1M1J4	InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300
EnsemblPlants:KRH21113	ProteinID:KRH21113	ProteinID:KRH21113.1	InterPro:PB1_dom	PFAM:PF02309	PFAM:PF02362
PFAM:PF06507	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF68	SMART:SM01019
SUPFAM:SSF101936	SUPFAM:SSF54277	UniParc:UPI00023CF6E1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr13:+:33457802..33464856

Molecular Weight (calculated)

99842.8 Da

IEP (calculated)

6.756

GRAVY (calculated)

-0.497

Length

896 amino acids

Sequence
(BLAST)

001: MRLSSAGFSP PPQEGENRVL DSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAVSTNKE VDAHIPNYPS LPPQLICQLH NMTMHADAET DEVYAQMTLQ
101: PLNPQEQKEA YLPAELGTPS KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHGNEWKFR HIFRGQPKRH LLTTGWSVFV
201: SAKRLVAGDS VLFIWNEKNQ LLLGIRRANR PQTVMPSSVL SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYVKAVYHT RVSVGMRFRM
301: LFETEESSVR RYMGTITGIS DLDPVRWQNS HWRSVKVGWD ESTAGDRQPR VSLWEIEPLT TFPMYPSPFP LRLKRPWPPG LPSFHAGMKD DDFGPNSPLL
401: WLRDPDRGLP SLNFQGIGIN PWMQPRFDPT MLNMQTDMYQ AAAVQDMRSL DPSKQHSASL LPFQQPQNFP NRTAALMQAQ MLQQSQPQQI FGNTQENQHS
501: PQSQAHLQQH LQHQHSFNSQ HHHHHQQQQQ RQQHQVVDNQ QISSAVSTMS QFVSAPQPQS PPMQVISSMC QQQNFSDSNG NTVTTIVSPL HSILGSFPQD
601: ETSHLLNLPR TSSWIPVQNS SGWPSKRVAV DPLLSSGASQ CVLPQVEQLG QPQSTMSQNA ISLPPFPGRE CSIDQEGSND PQNHLLFGVN IEPSSLLMPN
701: GMSSLKGVCG NNGSSTLPYQ SSNYLNTTTR TDSSLNHGMT PNIGDSGFLQ CLEEAGQGNP LNKTFVKVYK SGSFGRSLDI TKFSSYHELR GELARMFGLE
801: GELEDPVRSG WQLVFVDREN DVLLLGDGPW PEFVNSVWCI KILSPQEVQQ MGNNGLELLN SFPIQRLSNG ICDDYVSRQD PRNLGTGITT VGSLDY

Best Arabidopsis Sequence Match ( AT1G30330.1 )
(BLAST)

001: MRLSSAGFNP QPHEGEKRVL NSELWHACAG PLVSLPPVGS RVVYFPQGHS EQVAASTNKE VDAHIPNYPS LHPQLICQLH NVTMHADVET DEVYAQMTLQ
101: PLNAQEQKDP YLPAELGVPS RQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDYSQ QPPAQELMAR DLHDNEWKFR HIFRGQPKRH LLTTGWSVFV
201: SAKRLVAGDS VLFIWNDKNQ LLLGIRRANR PQTVMPSSVL SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYVKAVYHT RVSVGMRFRM
301: LFETEESSVR RYMGTITGIC DLDPTRWANS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT TFPMYPSPFP LRLKRPWPPG LPSFHGLKED DMGMSMSSPL
401: MWDRGLQSLN FQGMGVNPWM QPRLDTSGLL GMQNDVYQAM AAAALQDMRG IDPAKAAASL LQFQNSPGFS MQSPSLVQPQ MLQQQLSQQQ QQLSQQQQQQ
501: QQLSQQQQQQ LSQQQQQQLS QQQQQQLSQQ QQQQAYLGVP ETHQPQSQAQ SQSNNHLSQQ QQQVVDNHNP SASSAAVVSA MSQFGSASQP NTSPLQSMTS
601: LCHQQSFSDT NGGNNPISPL HTLLSNFSQD ESSQLLHLTR TNSAMTSSGW PSKRPAVDSS FQHSGAGNNN TQSVLEQLGQ SHTSNVPPNA VSLPPFPGGR
701: ECSIEQEGSA SDPHSHLLFG VNIDSSSLLM PNGMSNLRSI GIEGGDSTTL PFTSSNFNND FSGNLAMTTP SSCIDESGFL QSSENLGSEN PQSNTFVKVY
801: KSGSFGRSLD ISKFSSYHEL RSELARMFGL EGQLEDPVRS GWQLVFVDRE NDVLLLGDDP WPEFVSSVWC IKILSPQEVQ QMGKRGLELL NSAPSSNNVD
901: KLPSNGNCDD FGNRSDPRNL GNGIASVGGS FNY

Arabidopsis Description

ARF6Auxin response factor 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZTX8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.