Factsheet for TraesCS5A01G038300.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G045700.2	Wheat	nucleus	98.89	98.78
TraesCS5B01G039800.1	Wheat	nucleus	97.89	98.77
HORVU5Hr1G009650.20	Barley	nucleus	96.44	97.31
KRH58711	Soybean	nucleus	37.93	86.77
EES17392	Sorghum	nucleus	79.42	79.78
Os12t0613700-01	Rice	nucleus	78.64	78.64
Zm00001d031064_P003	Maize	nucleus	77.53	77.7
Zm00001d041497_P005	Maize	nucleus	76.64	77.59
GSMUA_Achr5P26580_001	Banana	nucleus	56.95	63.44
GSMUA_Achr3P23290_001	Banana	nucleus	57.84	63.41
VIT_10s0003g04100.t01	Wine grape	nucleus	63.07	62.44
KRH11131	Soybean	nucleus	61.29	61.36
KRH21113	Soybean	nucleus	60.85	61.05
CDY02285	Canola	nucleus	59.07	60.82
TraesCS7A01G461700.1	Wheat	nucleus	61.29	60.62
CDY12048	Canola	nucleus	56.84	60.33
Bra010776.1-P	Field mustard	nucleus	55.73	60.22
CDX90245	Canola	nucleus	57.06	60.21
KRH42603	Soybean	nucleus	60.4	60.0
GSMUA_Achr11P...	Banana	nucleus	60.73	59.8
CDY09598	Canola	nucleus	57.84	59.77
TraesCS6A01G138600.4	Wheat	nucleus	61.18	59.27
AT1G30330.3	Thale cress	nucleus	60.62	58.29
TraesCS2A01G547800.1	Wheat	nucleus	51.28	55.48
TraesCS7A01G160800.1	Wheat	nucleus	45.27	38.18
TraesCS2A01G309300.1	Wheat	nucleus	26.03	35.78
TraesCS2A01G491000.1	Wheat	nucleus	36.37	34.24
TraesCS7A01G252000.2	Wheat	nucleus	39.6	32.75
TraesCS6A01G113000.1	Wheat	nucleus	41.27	32.69
TraesCS3A01G442000.1	Wheat	nucleus	28.48	32.12
TraesCS7A01G416400.1	Wheat	nucleus	41.38	31.71
TraesCS3A01G449300.3	Wheat	nucleus	28.81	31.24
TraesCS3A01G159200.1	Wheat	nucleus	24.92	29.51

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	InterPro:AUX/IAA_dom	InterPro:Auxin_resp
InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725
GO:GO:0009987	InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300	InterPro:PB1_dom	PFAM:PF02309
PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF67
SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54277	EnsemblPlantsGene:TraesCS5A01G038300	EnsemblPlants:TraesCS5A01G038300.2	TIGR:cd10017
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5A:+:35627715..35632660

Molecular Weight (calculated)

99215.6 Da

IEP (calculated)

6.208

GRAVY (calculated)

-0.440

Length

899 amino acids

Sequence
(BLAST)

001: MERKLSMSEM PQSLPENDGE QRCLNSELWH ACAGPLVSLP AVGSRVIYFP QGHSEQVAAS TNKEVDAQIP NYPNLPPQLI CQLHNVTMHA DAETDEVYAQ
101: MTLQPLSPEE QKEPFLPIEL GAASKQPTNY FCKTLTASDT STHGGFSVPR RSAEKVFPPL DFSLQPPCQE LIAKDLHDNE WKFRHIFRGQ PKRHLLTTGW
201: SVFVSAKRLV AGDSVIFIWN DNNQLLLGIR HANRPQTIMP SSVLSSDSMH IGLLAAAAHA AATNSRFTIF YNPRASPSEF IIPLAKYVKS VYHTRVSVGM
301: RFRMLFETEE SSVRRYMGTI TTISDLDSVR WPNSHWRSVK VGWDESTAGE KQPRVSLWEI EPLTTFPMYP TAFPLRLKRP WASGLPSMHG MFNVLFCIIC
401: AGVKNDDFAR YSSLMWLGDG DRGAQSLNFQ GVGASPWLQP RMDSPLLGLK PDTYQQMAAA ALEEIRTGDP SKQSSALLQF QQTQNPNGGL NSVYANHVLQ
501: QMQYQAQQSS LQTVQHGHSQ YSGNPGFLQS QFQQLHLHNP PAPPQQGHQV IQQSHQEMQQ QLSSGCHRIS DVDSSMPGSE SASQSQSSFY QQNLLEGNND
601: PSLHLHNGFR NFSSQDSSNL VSLPRTDQLM APEGWPSKRL AVEPLGHIES RSVQPKHENV NHQSNMSHFA GTLAPQSARD SSSVQAYGAN VDNQFLSSSF
701: AFQDGMAGAR GGSSSGTVSM AIPLLRYSGE DLPPADTLAT SSCLGESGTF NSLDNMCGVN PSQDGTFVKV YKSGSPGRSL DITRFSSYYE LRSELEHLFG
801: LEGQLEDPVR SGWQLVFVDR ENDILLVGDD PWQEFVNSVG CIKILSQQEV QQMVRGGEGL LTSAPGARMA HGNVCDGYSG GHDLQNLTGN MASVPPLDY

Best Arabidopsis Sequence Match ( AT1G30330.1 )
(BLAST)

001: MRLSSAGFNP QPHEGEKRVL NSELWHACAG PLVSLPPVGS RVVYFPQGHS EQVAASTNKE VDAHIPNYPS LHPQLICQLH NVTMHADVET DEVYAQMTLQ
101: PLNAQEQKDP YLPAELGVPS RQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDYSQ QPPAQELMAR DLHDNEWKFR HIFRGQPKRH LLTTGWSVFV
201: SAKRLVAGDS VLFIWNDKNQ LLLGIRRANR PQTVMPSSVL SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYVKAVYHT RVSVGMRFRM
301: LFETEESSVR RYMGTITGIC DLDPTRWANS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT TFPMYPSPFP LRLKRPWPPG LPSFHGLKED DMGMSMSSPL
401: MWDRGLQSLN FQGMGVNPWM QPRLDTSGLL GMQNDVYQAM AAAALQDMRG IDPAKAAASL LQFQNSPGFS MQSPSLVQPQ MLQQQLSQQQ QQLSQQQQQQ
501: QQLSQQQQQQ LSQQQQQQLS QQQQQQLSQQ QQQQAYLGVP ETHQPQSQAQ SQSNNHLSQQ QQQVVDNHNP SASSAAVVSA MSQFGSASQP NTSPLQSMTS
601: LCHQQSFSDT NGGNNPISPL HTLLSNFSQD ESSQLLHLTR TNSAMTSSGW PSKRPAVDSS FQHSGAGNNN TQSVLEQLGQ SHTSNVPPNA VSLPPFPGGR
701: ECSIEQEGSA SDPHSHLLFG VNIDSSSLLM PNGMSNLRSI GIEGGDSTTL PFTSSNFNND FSGNLAMTTP SSCIDESGFL QSSENLGSEN PQSNTFVKVY
801: KSGSFGRSLD ISKFSSYHEL RSELARMFGL EGQLEDPVRS GWQLVFVDRE NDVLLLGDDP WPEFVSSVWC IKILSPQEVQ QMGKRGLELL NSAPSSNNVD
901: KLPSNGNCDD FGNRSDPRNL GNGIASVGGS FNY

Arabidopsis Description

ARF6Auxin response factor 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZTX8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.