Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G363100.1 | Wheat | nucleus | 99.23 | 99.23 |
| TraesCS7D01G449900.2 | Wheat | nucleus | 98.79 | 98.9 |
| HORVU7Hr1G106280.1 | Barley | nucleus | 97.8 | 94.78 |
| KRH58711 | Soybean | nucleus | 38.06 | 88.04 |
| Os06t0677800-01 | Rice | nucleus | 88.34 | 87.57 |
| EER90218 | Sorghum | nucleus | 87.13 | 86.18 |
| Zm00001d014377_P002 | Maize | nucleus | 86.25 | 85.5 |
| Zm00001d036593_P001 | Maize | plastid | 84.71 | 80.21 |
| TraesCS6A01G138600.4 | Wheat | nucleus | 79.76 | 78.12 |
| VIT_10s0003g04100.t01 | Wine grape | nucleus | 69.53 | 69.6 |
| GSMUA_Achr5P00590_001 | Banana | nucleus | 69.2 | 69.2 |
| GSMUA_Achr11P... | Banana | nucleus | 62.27 | 68.28 |
| GSMUA_Achr6P19850_001 | Banana | nucleus | 62.6 | 66.55 |
| KRH11131 | Soybean | nucleus | 65.68 | 66.48 |
| KRH21113 | Soybean | nucleus | 65.46 | 66.41 |
| CDY12048 | Canola | nucleus | 61.72 | 66.23 |
| Bra010776.1-P | Field mustard | nucleus | 60.62 | 66.23 |
| CDX90245 | Canola | nucleus | 61.94 | 66.08 |
| CDY02285 | Canola | nucleus | 63.37 | 65.98 |
| CDY09598 | Canola | nucleus | 62.05 | 64.83 |
| KRH42603 | Soybean | nucleus | 64.14 | 64.42 |
| AT1G30330.3 | Thale cress | nucleus | 64.91 | 63.1 |
| TraesCS5A01G038300.2 | Wheat | nucleus | 60.62 | 61.29 |
| TraesCS2A01G547800.1 | Wheat | nucleus | 53.69 | 58.72 |
| TraesCS7A01G160800.1 | Wheat | nucleus | 48.18 | 41.09 |
| TraesCS2A01G309300.1 | Wheat | nucleus | 27.17 | 37.77 |
| TraesCS6A01G113000.1 | Wheat | nucleus | 44.44 | 35.59 |
| TraesCS7A01G252000.2 | Wheat | nucleus | 42.46 | 35.51 |
| TraesCS2A01G491000.1 | Wheat | nucleus | 36.41 | 34.66 |
| TraesCS7A01G416400.1 | Wheat | nucleus | 44.66 | 34.61 |
| TraesCS3A01G442000.1 | Wheat | nucleus | 28.93 | 33.0 |
| TraesCS3A01G449300.3 | Wheat | nucleus | 28.27 | 31.0 |
| TraesCS3A01G159200.1 | Wheat | nucleus | 24.42 | 29.25 |
Protein Annotations
| MapMan:15.5.5.1 | Gene3D:2.30.30.1040 | Gene3D:2.40.330.10 | Gene3D:3.10.20.90 | InterPro:AUX/IAA_dom | InterPro:Auxin_resp |
| InterPro:B3_DNA-bd | InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009725 |
| GO:GO:0009987 | InterPro:IPR000270 | InterPro:IPR003340 | InterPro:IPR015300 | InterPro:PB1_dom | PFAM:PF02309 |
| PFAM:PF02362 | PFAM:PF06507 | PFscan:PS50863 | PFscan:PS51745 | PANTHER:PTHR31384 | PANTHER:PTHR31384:SF22 |
| SMART:SM01019 | SUPFAM:SSF101936 | SUPFAM:SSF54277 | EnsemblPlantsGene:TraesCS7A01G461700 | EnsemblPlants:TraesCS7A01G461700.1 | TIGR:cd10017 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr7A:-:657716427..657721535
Molecular Weight (calculated)
100318.0 Da
IEP (calculated)
6.278
GRAVY (calculated)
-0.469
Length
909 amino acids
Sequence
(BLAST)
(BLAST)
001: MRLSSPAGAV LPAQAPPSPE VAEEHKCLNS ELWHACAGPL VSLPAVGSRV VYFPQGHSEQ VAASTNKEIE SQIPNYPNLP PQLICQLHNV TMHADAETDE
101: VYAQMTLQPL NPQELKDPYL PAELGTANKQ PTNYFCKTLT ASDTSTHGGF SVPRRAAEKV FPPLDFTMQP PAQELFAKDL HGNEWKFRHI FRGQPKRHLL
201: TTGWSVFVSA KRLVAGDSVL FIWNDNNQLL LGIRRATRPQ TVMPSSVLSS DSMHIGLLAA AAHAASTNSR FTIFYNPRAS PCEFVIPLAK YVKAVYHTRI
301: SVGMRFRMLF ETEESSVRRY MGTITGISDL DDVRWPNSHW RSVKVGWDES TAGERQPRVS LWEIEPLTTF PMYPTPFPLR LKRPWPTGLP SLHGGKDDDL
401: TSSLMWLRDS ANPGFQSLNF GGAGMNPWMQ PRLDASLLGL QPDIYQTMAA AAFQDPTKMS PTMLQFQQPQ NMVGRATPLL QSQILQQMQP QFQQQSYLQN
501: MNGTTIQGQA QSEFLQQQLQ RCQSFNEQKP QLLQQQESNQ QQSQGMQVPQ HQHMQQQKNM ANYQSAYSQL SPGPQSSPTA LQTALPFSQS QSFSDTNMSS
601: LSPSGAPAMH NTLGPFSSET ASHLSMSRPT AVPVPDSWSS KRVAVESLIP SRPQSTTHME QLSSTPPSIP QSSALAPLPG RGCLVDQDGS SDPQNHLLFG
701: VNIDSHSLLM QGGLHDENDS TAIPYSTSNF LSPSQHDFSL DQTLNSSGCL DESGYVPCSH TPDQVNQPPA TFVKVYKSGT YGRSLDITKF SNYHELRREL
801: GRLFGLEGQL EDPMRSGWQL VFVDREEDVL LVGDDPWQEF VNSVSCIKIL SPQEVQQMGK QGLELLSSAP GKRLGGGGGG SSCDDYASRQ ESRSLSTGIA
901: SVGSVEVEF
101: VYAQMTLQPL NPQELKDPYL PAELGTANKQ PTNYFCKTLT ASDTSTHGGF SVPRRAAEKV FPPLDFTMQP PAQELFAKDL HGNEWKFRHI FRGQPKRHLL
201: TTGWSVFVSA KRLVAGDSVL FIWNDNNQLL LGIRRATRPQ TVMPSSVLSS DSMHIGLLAA AAHAASTNSR FTIFYNPRAS PCEFVIPLAK YVKAVYHTRI
301: SVGMRFRMLF ETEESSVRRY MGTITGISDL DDVRWPNSHW RSVKVGWDES TAGERQPRVS LWEIEPLTTF PMYPTPFPLR LKRPWPTGLP SLHGGKDDDL
401: TSSLMWLRDS ANPGFQSLNF GGAGMNPWMQ PRLDASLLGL QPDIYQTMAA AAFQDPTKMS PTMLQFQQPQ NMVGRATPLL QSQILQQMQP QFQQQSYLQN
501: MNGTTIQGQA QSEFLQQQLQ RCQSFNEQKP QLLQQQESNQ QQSQGMQVPQ HQHMQQQKNM ANYQSAYSQL SPGPQSSPTA LQTALPFSQS QSFSDTNMSS
601: LSPSGAPAMH NTLGPFSSET ASHLSMSRPT AVPVPDSWSS KRVAVESLIP SRPQSTTHME QLSSTPPSIP QSSALAPLPG RGCLVDQDGS SDPQNHLLFG
701: VNIDSHSLLM QGGLHDENDS TAIPYSTSNF LSPSQHDFSL DQTLNSSGCL DESGYVPCSH TPDQVNQPPA TFVKVYKSGT YGRSLDITKF SNYHELRREL
801: GRLFGLEGQL EDPMRSGWQL VFVDREEDVL LVGDDPWQEF VNSVSCIKIL SPQEVQQMGK QGLELLSSAP GKRLGGGGGG SSCDDYASRQ ESRSLSTGIA
901: SVGSVEVEF
001: MRLSSAGFNP QPHEVTGEKR VLNSELWHAC AGPLVSLPPV GSRVVYFPQG HSEQVAASTN KEVDAHIPNY PSLHPQLICQ LHNVTMHADV ETDEVYAQMT
101: LQPLNAQEQK DPYLPAELGV PSRQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDY SQQPPAQELM ARDLHDNEWK FRHIFRGQPK RHLLTTGWSV
201: FVSAKRLVAG DSVLFIWNDK NQLLLGIRRA NRPQTVMPSS VLSSDSMHLG LLAAAAHAAA TNSRFTIFYN PRASPSEFVI PLAKYVKAVY HTRVSVGMRF
301: RMLFETEESS VRRYMGTITG ICDLDPTRWA NSHWRSVKVG WDESTAGERQ PRVSLWEIEP LTTFPMYPSP FPLRLKRPWP PGLPSFHGLK EDDMGMSMSS
401: PLMWDRGLQS LNFQGMGVNP WMQPRLDTSG LLGMQNDVYQ AMAAAALQDM RGIDPAKAAA SLLQFQNSPG FSMQSPSLVQ PQMLQQQLSQ QQQQLSQQQQ
501: QQQQLSQQQQ QQLSQQQQQQ LSQQQQQQLS QQQQQQAYLG VPETHQPQSQ AQSQSNNHLS QQQQQVVDNH NPSASSAAVV SAMSQFGSAS QPNTSPLQSM
601: TSLCHQQSFS DTNGGNNPIS PLHTLLSNFS QDESSQLLHL TRTNSAMTSS GWPSKRPAVD SSFQHSGAGN NNTQSVLEQL GQSHTSNVPP NAVSLPPFPG
701: GRECSIEQEG SASDPHSHLL FGVNIDSSSL LMPNGMSNLR SIGIEGGDST TLPFTSSNFN NDFSGNLAMT TPSSCIDESG FLQSSENLGS ENPQSNTFVK
801: VYKSGSFGRS LDISKFSSYH ELRSELARMF GLEGQLEDPV RSGWQLVFVD RENDVLLLGD DPWPEFVSSV WCIKILSPQE VQQMGKRGLE LLNSAPSSNN
901: VDKLPSNGNC DDFGNRSDPR NLGNGIASVG GSFNY
101: LQPLNAQEQK DPYLPAELGV PSRQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDY SQQPPAQELM ARDLHDNEWK FRHIFRGQPK RHLLTTGWSV
201: FVSAKRLVAG DSVLFIWNDK NQLLLGIRRA NRPQTVMPSS VLSSDSMHLG LLAAAAHAAA TNSRFTIFYN PRASPSEFVI PLAKYVKAVY HTRVSVGMRF
301: RMLFETEESS VRRYMGTITG ICDLDPTRWA NSHWRSVKVG WDESTAGERQ PRVSLWEIEP LTTFPMYPSP FPLRLKRPWP PGLPSFHGLK EDDMGMSMSS
401: PLMWDRGLQS LNFQGMGVNP WMQPRLDTSG LLGMQNDVYQ AMAAAALQDM RGIDPAKAAA SLLQFQNSPG FSMQSPSLVQ PQMLQQQLSQ QQQQLSQQQQ
501: QQQQLSQQQQ QQLSQQQQQQ LSQQQQQQLS QQQQQQAYLG VPETHQPQSQ AQSQSNNHLS QQQQQVVDNH NPSASSAAVV SAMSQFGSAS QPNTSPLQSM
601: TSLCHQQSFS DTNGGNNPIS PLHTLLSNFS QDESSQLLHL TRTNSAMTSS GWPSKRPAVD SSFQHSGAGN NNTQSVLEQL GQSHTSNVPP NAVSLPPFPG
701: GRECSIEQEG SASDPHSHLL FGVNIDSSSL LMPNGMSNLR SIGIEGGDST TLPFTSSNFN NDFSGNLAMT TPSSCIDESG FLQSSENLGS ENPQSNTFVK
801: VYKSGSFGRS LDISKFSSYH ELRSELARMF GLEGQLEDPV RSGWQLVFVD RENDVLLLGD DPWPEFVSSV WCIKILSPQE VQQMGKRGLE LLNSAPSSNN
901: VDKLPSNGNC DDFGNRSDPR NLGNGIASVG GSFNY
Arabidopsis Description
ARF6Auxin response factor 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZTX8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.