CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d014377_P002	Maize	nucleus	95.32	95.53
Os06t0677800-01	Rice	nucleus	90.75	90.95
Zm00001d036593_P001	Maize	plastid	93.69	89.69
KRH58711	Soybean	nucleus	38.19	89.31
TraesCS7B01G363100.1	Wheat	nucleus	86.18	87.13
TraesCS7A01G461700.1	Wheat	nucleus	86.18	87.13
TraesCS7D01G449900.2	Wheat	nucleus	85.96	87.0
HORVU7Hr1G106280.1	Barley	nucleus	86.29	84.54
EES04575	Sorghum	nucleus	79.43	80.13
GSMUA_Achr5P00590_001	Banana	nucleus	69.31	70.08
GSMUA_Achr11P...	Banana	nucleus	63.0	69.84
VIT_10s0003g04100.t01	Wine grape	nucleus	68.66	69.49
GSMUA_Achr6P19850_001	Banana	nucleus	62.46	67.13
KRH11131	Soybean	nucleus	65.29	66.82
KRH21113	Soybean	nucleus	64.85	66.52
CDY02285	Canola	nucleus	62.68	65.98
CDY12048	Canola	nucleus	60.5	65.64
Bra010776.1-P	Field mustard	nucleus	59.41	65.62
CDX90245	Canola	nucleus	60.72	65.49
KRH42603	Soybean	nucleus	63.98	64.97
CDY09598	Canola	nucleus	61.48	64.94
AT1G30330.3	Thale cress	nucleus	64.2	63.1
EES17392	Sorghum	nucleus	60.94	62.57
KXG27404	Sorghum	nucleus	54.3	60.93
KXG19536	Sorghum	nucleus	47.01	41.03
EES10850	Sorghum	nucleus	27.31	37.97
EES06968	Sorghum	nucleus	27.53	37.65
EES13038	Sorghum	nucleus	36.67	35.62
EER90336	Sorghum	nucleus	44.4	35.2
EES15359	Sorghum	nucleus	41.57	34.89
OQU84350	Sorghum	nucleus	39.72	34.11
KXG34038	Sorghum	nucleus	28.18	31.98
EES17013	Sorghum	nucleus	28.94	31.7
EES02172	Sorghum	nucleus	23.5	31.4
OQU83539	Sorghum	nucleus	27.42	30.92

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	EntrezGene:8061613	InterPro:AUX/IAA_dom
InterPro:Auxin_resp	InterPro:B3_DNA-bd	UniProt:C5Z7U5	InterPro:DNA-bd_pseudobarrel_sf	EnsemblPlants:EER90218	ProteinID:EER90218
ProteinID:EER90218.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270	InterPro:IPR003340
InterPro:IPR015300	InterPro:PB1_dom	PFAM:PF02309	PFAM:PF02362	PFAM:PF06507	PFscan:PS50863
PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF22	SMART:SM01019	EnsemblPlantsGene:SORBI_3010G229000	SUPFAM:SSF101936
SUPFAM:SSF54277	UniParc:UPI0001A8965C	RefSeq:XP_002438851.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr10:-:57181057..57189509

Molecular Weight (calculated)

101698.0 Da

IEP (calculated)

6.362

GRAVY (calculated)

-0.469

Length

919 amino acids

Sequence
(BLAST)

001: MRLSSSSGSV IPAAQPGSPE AVEEHKCLNS ELWHACAGPL VSLPAVGSRV VYFPQGHSEQ VAASTNKEME SQIPNYPNLP PQLICQLHNV TMHADAETDE
101: VYAQMTLQPL NPQELKDPYL PAELGSANKQ PTNYFCKTLT ASDTSTHGGF SVPRRAAEKV FPPLDFTQQP PCQELMAKDL HGNEWKFRHI FRGQPKRHLL
201: TTGWSVFVSA KRLVAGDSVL FIWNDNNQLL LGIRRANRPQ TVMPSSVLSS DSMHIGLLAA AAHAASTNSR FTIFYNPRAS PSEFVIPLAK YVKAVYHTRI
301: SVGMRFRMLF ETEESSVRRY MGTITGISDL DSVRWPNSHW RSVKVGWDES TAGERQPRVS LWEIEPLTTF PMYPSPFPLR LKRPWPTGLP SLHGGKDDDL
401: ANSLMWLRDA ANPGFQSLNF GGLGMNPWMQ PRLDASLLGL QPDMYQAMAT AAFQDPTKQV SSPTMLQFQQ PQNIAGRATP LLSSQILQQS HPQFQQQQYL
501: QNISESTIQA QGQSEFLKQQ IQRSQSFNEQ KPQLQPQQQQ QESQQQQQQQ SQCLQVPQHQ QMQQHNMTNY QSVSNALSAF SQLSSASQSS PVSLQTILPF
601: SQAQSFTDTN VSSLSPSNTN TMQNTLRPFS SEAVSHLSMP RPTAIPVSDP WSSKRVAVES LLPSRPQVSS QMEQLDSAPA SIPHSSALAP LPGRGCLVDQ
701: DVNSDPQNHV LFGVSIDSQS LLMQGGIPGL QNGNDSTAIP YSTSNFLSPS QNDFPLDHTL NSPGCLDDSG YVPPCSDNSD QVNRPPATFV KVYKSGTYGR
801: SLDITRFSSY HELRRELGRL FGLEGQLEDP LRSGWQLVFV DREEDVLLVG DDPWQEFVST VSCIKILSPQ EVQQMGKQGL ELLSSGPARR LGSSCDDYVS
901: RQESRSLSTG IASVGSVEF

Best Arabidopsis Sequence Match ( AT1G30330.2 )
(BLAST)

001: MRLSSAGFNP QPHEVTGEKR VLNSELWHAC AGPLVSLPPV GSRVVYFPQG HSEQVAASTN KEVDAHIPNY PSLHPQLICQ LHNVTMHADV ETDEVYAQMT
101: LQPLNAQEQK DPYLPAELGV PSRQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDY SQQPPAQELM ARDLHDNEWK FRHIFRGQPK RHLLTTGWSV
201: FVSAKRLVAG DSVLFIWNDK NQLLLGIRRA NRPQTVMPSS VLSSDSMHLG LLAAAAHAAA TNSRFTIFYN PRASPSEFVI PLAKYVKAVY HTRVSVGMRF
301: RMLFETEESS VRRYMGTITG ICDLDPTRWA NSHWRSVKVG WDESTAGERQ PRVSLWEIEP LTTFPMYPSP FPLRLKRPWP PGLPSFHGLK EDDMGMSMSS
401: PLMWDRGLQS LNFQGMGVNP WMQPRLDTSG LLGMQNDVYQ AMAAAALQDM RGIDPAKAAA SLLQFQNSPG FSMQSPSLVQ PQMLQQQLSQ QQQQLSQQQQ
501: QQQQLSQQQQ QQLSQQQQQQ LSQQQQQQLS QQQQQQAYLG VPETHQPQSQ AQSQSNNHLS QQQQQVVDNH NPSASSAAVV SAMSQFGSAS QPNTSPLQSM
601: TSLCHQQSFS DTNGGNNPIS PLHTLLSNFS QDESSQLLHL TRTNSAMTSS GWPSKRPAVD SSFQHSGAGN NNTQSVLEQL GQSHTSNVPP NAVSLPPFPG
701: GRECSIEQEG SASDPHSHLL FGVNIDSSSL LMPNGMSNLR SIGIEGGDST TLPFTSSNFN NDFSGNLAMT TPSSCIDESG FLQSSENLGS ENPQSNTFVK
801: VYKSGSFGRS LDISKFSSYH ELRSELARMF GLEGQLEDPV RSGWQLVFVD RENDVLLLGD DPWPEFVSSV WCIKILSPQE VQQMGKRGLE LLNSAPSSNN
901: VDKLPSNGNC DDFGNRSDPR NLGNGIASVG GSFNY

Arabidopsis Description

ARF6Auxin response factor 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZTX8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.