Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d045026_P002 | Maize | nucleus | 96.77 | 96.77 |
| Os06t0196700-02 | Rice | nucleus | 88.7 | 88.53 |
| TraesCS7D01G161900.1 | Wheat | nucleus | 85.38 | 84.41 |
| TraesCS7A01G160800.1 | Wheat | nucleus | 85.0 | 83.96 |
| TraesCS7B01G065800.2 | Wheat | plastid | 84.62 | 82.42 |
| HORVU7Hr1G033820.5 | Barley | nucleus | 82.05 | 81.05 |
| GSMUA_Achr3P10240_001 | Banana | nucleus | 35.71 | 60.65 |
| GSMUA_Achr9P18170_001 | Banana | nucleus | 48.34 | 59.6 |
| CDX83778 | Canola | nucleus | 49.86 | 51.47 |
| CDX96672 | Canola | nucleus | 49.67 | 51.27 |
| KRH37536 | Soybean | nucleus | 54.51 | 51.02 |
| Bra016517.1-P | Field mustard | nucleus | 48.62 | 50.69 |
| KRH12587 | Soybean | nucleus | 53.94 | 50.62 |
| Bra025720.1-P | Field mustard | nucleus | 50.14 | 50.33 |
| CDY26690 | Canola | nucleus | 50.14 | 50.33 |
| AT1G19220.1 | Thale cress | nucleus | 51.85 | 50.28 |
| KRH02575 | Soybean | nucleus | 54.23 | 50.26 |
| KRH19355 | Soybean | nucleus | 53.94 | 50.22 |
| VIT_11s0016g00640.t01 | Wine grape | nucleus | 54.99 | 50.13 |
| CDY41030 | Canola | nucleus | 50.14 | 49.91 |
| Solyc07g042260.2.1 | Tomato | nucleus | 52.99 | 49.08 |
| KXG27404 | Sorghum | nucleus | 37.7 | 48.47 |
| CDX92437 | Canola | nucleus | 47.77 | 48.37 |
| PGSC0003DMT400006151 | Potato | nucleus | 52.8 | 48.06 |
| Bra020125.1-P | Field mustard | nucleus | 50.05 | 47.91 |
| EER90218 | Sorghum | nucleus | 41.03 | 47.01 |
| EES04575 | Sorghum | nucleus | 40.36 | 46.65 |
| CDY45069 | Canola | nucleus | 49.29 | 46.63 |
| CDY16560 | Canola | nucleus | 45.39 | 45.87 |
| EES17392 | Sorghum | nucleus | 38.84 | 45.7 |
| AT5G20730.1 | Thale cress | nucleus | 50.52 | 45.67 |
| EER90336 | Sorghum | nucleus | 47.1 | 42.8 |
| EES15359 | Sorghum | nucleus | 43.78 | 42.1 |
| OQU84350 | Sorghum | nucleus | 41.79 | 41.12 |
| EES13038 | Sorghum | nucleus | 33.52 | 37.31 |
| EES06968 | Sorghum | nucleus | 22.98 | 36.01 |
| Bra002327.1-P | Field mustard | nucleus | 48.34 | 35.37 |
| EES10850 | Sorghum | nucleus | 22.13 | 35.25 |
| EES02172 | Sorghum | nucleus | 21.18 | 32.41 |
| KXG34038 | Sorghum | nucleus | 24.88 | 32.35 |
| EES17013 | Sorghum | nucleus | 23.74 | 29.8 |
| OQU83539 | Sorghum | nucleus | 22.6 | 29.2 |
Protein Annotations
| MapMan:15.5.5.1 | Gene3D:2.30.30.1040 | Gene3D:2.40.330.10 | Gene3D:3.10.20.90 | UniProt:A0A194YIW1 | InterPro:AUX/IAA_dom |
| InterPro:Auxin_resp | InterPro:B3_DNA-bd | ncoils:Coil | InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009725 | GO:GO:0009734 |
| GO:GO:0009987 | InterPro:IPR000270 | InterPro:IPR003340 | InterPro:IPR015300 | EnsemblPlants:KXG19536 | ProteinID:KXG19536 |
| ProteinID:KXG19536.1 | InterPro:PB1_dom | PFAM:PF02309 | PFAM:PF02362 | PFAM:PF06507 | PFscan:PS50863 |
| PFscan:PS51745 | PANTHER:PTHR31384 | PANTHER:PTHR31384:SF21 | SMART:SM01019 | EnsemblPlantsGene:SORBI_3010G073600 | SUPFAM:SSF101936 |
| SUPFAM:SSF54277 | UniParc:UPI0003C6E191 | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr10:+:6016184..6023986
Molecular Weight (calculated)
116462.0 Da
IEP (calculated)
6.618
GRAVY (calculated)
-0.502
Length
1053 amino acids
Sequence
(BLAST)
(BLAST)
0001: MKDQGSGGVT PSPAEGEKKP INSELWHACA GPLVSLPPVG SLVVYFPQGH SEQVAASMHK ELDTIPSYPS LPSKLICKLL SLTLHADSET DEVYAQMTLQ
0101: PVNKYDRDAM LASELGLKQN KQPTEFFCKT LTASDTSTHG GFSVPRRAAE KIFPPLDFTM QPPAQELIAK DLHDISWKFR HIYRGQPKRH LLTTGWSVFV
0201: STKRLLAGDS VLFIRDEKSQ LLLGIRRASR PQPALSSSVL SCDSMHIGIL AAAAHAAANS SPFTIFYNPR ASPSEFVIPL AKYNKALYTQ VSLGMRFRML
0301: FETEDSGVRR YMGTITGIGD LDPLRWKNSH WRNLQVGWDE STASERRTRV SIWEIEPVAT PFYICPPPFF RPKLPKQPGM PDDESEVESA FKRAMPWLAD
0401: DFALKDVQNA LFPGLSLVQW MAMQQNPQML ATAAPAVQSQ YLTSNALGMQ DGIGSVSEDP TKRLSMQAQN IGLPNLQAGS KVDHPAINSL AQHQQQPHHV
0501: LQQQQVQPLQ QSSAILQQQQ AQLLQQNAIH LQQQQEQLQR QQSQPQQQLK ATACLQSSDQ HKLKEQQPSG GQAVSQAQLL NHILQPSSSQ LQQLGLPKSP
0601: TQRPGLPGLT AMGSLQQSQL TQTSQLQQTA EYQQALLQSQ QPQLQQLSQS ELQLQLLQKI QQQNLLSQLN PQHQSQLIQQ LSQKSQEILQ QQVLQHQVGG
0701: ADAMGQLKHL QQTPLNHTTG SLTPQQLVRS HSALAESEEP SSSTAPSGSR ISPINSLSRA HQGSRNLPEM PATPQIEHLL QEIQCKSDNR IKNDIQGSKE
0801: TVHAPNRHLA SDQLDASSAT SFCLDESPRE GFSFPPVCLD NNVQVDPREN FLIAENVDTL MPDALLSRGM SSGKGICNLP TGQRDHRDVE NELSSAAFSS
0901: QSFGVPDMSF KPGCSSDVAV ADGGMASQGL WNSQTQRMRT FTKVQKRGSV GRSIDITRYR GYEDLRHDLA CMFGIQGQLE DPYRTDWKLV YVDHENDILL
1001: VGDDPWEEFV SCVKSIKILS SAEVQQMSLD GDLGCIPQTQ ACSASDDANA WRA
0101: PVNKYDRDAM LASELGLKQN KQPTEFFCKT LTASDTSTHG GFSVPRRAAE KIFPPLDFTM QPPAQELIAK DLHDISWKFR HIYRGQPKRH LLTTGWSVFV
0201: STKRLLAGDS VLFIRDEKSQ LLLGIRRASR PQPALSSSVL SCDSMHIGIL AAAAHAAANS SPFTIFYNPR ASPSEFVIPL AKYNKALYTQ VSLGMRFRML
0301: FETEDSGVRR YMGTITGIGD LDPLRWKNSH WRNLQVGWDE STASERRTRV SIWEIEPVAT PFYICPPPFF RPKLPKQPGM PDDESEVESA FKRAMPWLAD
0401: DFALKDVQNA LFPGLSLVQW MAMQQNPQML ATAAPAVQSQ YLTSNALGMQ DGIGSVSEDP TKRLSMQAQN IGLPNLQAGS KVDHPAINSL AQHQQQPHHV
0501: LQQQQVQPLQ QSSAILQQQQ AQLLQQNAIH LQQQQEQLQR QQSQPQQQLK ATACLQSSDQ HKLKEQQPSG GQAVSQAQLL NHILQPSSSQ LQQLGLPKSP
0601: TQRPGLPGLT AMGSLQQSQL TQTSQLQQTA EYQQALLQSQ QPQLQQLSQS ELQLQLLQKI QQQNLLSQLN PQHQSQLIQQ LSQKSQEILQ QQVLQHQVGG
0701: ADAMGQLKHL QQTPLNHTTG SLTPQQLVRS HSALAESEEP SSSTAPSGSR ISPINSLSRA HQGSRNLPEM PATPQIEHLL QEIQCKSDNR IKNDIQGSKE
0801: TVHAPNRHLA SDQLDASSAT SFCLDESPRE GFSFPPVCLD NNVQVDPREN FLIAENVDTL MPDALLSRGM SSGKGICNLP TGQRDHRDVE NELSSAAFSS
0901: QSFGVPDMSF KPGCSSDVAV ADGGMASQGL WNSQTQRMRT FTKVQKRGSV GRSIDITRYR GYEDLRHDLA CMFGIQGQLE DPYRTDWKLV YVDHENDILL
1001: VGDDPWEEFV SCVKSIKILS SAEVQQMSLD GDLGCIPQTQ ACSASDDANA WRA
0001: MKAPSNGFLP SSNEGEKKPI NSQLWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKQ TDFIPNYPNL PSKLICLLHS VTLHADTETD EVYAQMTLQP
0101: VNKYDREALL ASDMGLKLNR QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDTTWTFRH IYRGQPKRHL LTTGWSVFVS
0201: TKRLFAGDSV LFVRDEKSQL MLGIRRANRQ TPTLSSSVIS SDSMHIGILA AAAHANANSS PFTIFFNPRA SPSEFVVPLA KYNKALYAQV SLGMRFRMMF
0301: ETEDCGVRRY MGTVTGISDL DPVRWKGSQW RNLQVGWDES TAGDRPSRVS IWEIEPVITP FYICPPPFFR PKYPRQPGMP DDELDMENAF KRAMPWMGED
0401: FGMKDAQSSM FPGLSLVQWM SMQQNNPLSG SATPQLPSAL SSFNLPNNFA SNDPSKLLNF QSPNLSSANS QFNKPNTVNH ISQQMQAQPA MVKSQQQQQQ
0501: QQQQHQHQQQ QLQQQQQLQM SQQQVQQQGI YNNGTIAVAN QVSCQSPNQP TGFSQSQLQQ QSMLPTGAKM THQNINSMGN KGLSQMTSFA QEMQFQQQLE
0601: MHNSSQLLRN QQEQSSLHSL QQNLSQNPQQ LQMQQQSSKP SPSQQLQLQL LQKLQQQQQQ QSIPPVSSSL QPQLSALQQT QSHQLQQLLS SQNQQPLAHG
0701: NNSFPASTFM QPPQIQVSPQ QQGQMSNKNL VAAGRSHSGH TDGEAPSCST SPSANNTGHD NVSPTNFLSR NQQQGQAASV SASDSVFERA SNPVQELYTK
0801: TESRISQGMM NMKSAGEHFR FKSAVTDQID VSTAGTTYCP DVVGPVQQQQ TFPLPSFGFD GDCQSHHPRN NLAFPGNLEA VTSDPLYSQK DFQNLVPNYG
0901: NTPRDIETEL SSAAISSQSF GIPSIPFKPG CSNEVGGIND SGIMNGGGLW PNQTQRMRTY TKVQKRGSVG RSIDVTRYSG YDELRHDLAR MFGIEGQLED
1001: PLTSDWKLVY TDHENDILLV GDDPWEEFVN CVQNIKILSS VEVQQMSLDG DLAAIPTTNQ ACSETDSGNA WKVHYEDTSA AASFNR
0101: VNKYDREALL ASDMGLKLNR QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDTTWTFRH IYRGQPKRHL LTTGWSVFVS
0201: TKRLFAGDSV LFVRDEKSQL MLGIRRANRQ TPTLSSSVIS SDSMHIGILA AAAHANANSS PFTIFFNPRA SPSEFVVPLA KYNKALYAQV SLGMRFRMMF
0301: ETEDCGVRRY MGTVTGISDL DPVRWKGSQW RNLQVGWDES TAGDRPSRVS IWEIEPVITP FYICPPPFFR PKYPRQPGMP DDELDMENAF KRAMPWMGED
0401: FGMKDAQSSM FPGLSLVQWM SMQQNNPLSG SATPQLPSAL SSFNLPNNFA SNDPSKLLNF QSPNLSSANS QFNKPNTVNH ISQQMQAQPA MVKSQQQQQQ
0501: QQQQHQHQQQ QLQQQQQLQM SQQQVQQQGI YNNGTIAVAN QVSCQSPNQP TGFSQSQLQQ QSMLPTGAKM THQNINSMGN KGLSQMTSFA QEMQFQQQLE
0601: MHNSSQLLRN QQEQSSLHSL QQNLSQNPQQ LQMQQQSSKP SPSQQLQLQL LQKLQQQQQQ QSIPPVSSSL QPQLSALQQT QSHQLQQLLS SQNQQPLAHG
0701: NNSFPASTFM QPPQIQVSPQ QQGQMSNKNL VAAGRSHSGH TDGEAPSCST SPSANNTGHD NVSPTNFLSR NQQQGQAASV SASDSVFERA SNPVQELYTK
0801: TESRISQGMM NMKSAGEHFR FKSAVTDQID VSTAGTTYCP DVVGPVQQQQ TFPLPSFGFD GDCQSHHPRN NLAFPGNLEA VTSDPLYSQK DFQNLVPNYG
0901: NTPRDIETEL SSAAISSQSF GIPSIPFKPG CSNEVGGIND SGIMNGGGLW PNQTQRMRTY TKVQKRGSVG RSIDVTRYSG YDELRHDLAR MFGIEGQLED
1001: PLTSDWKLVY TDHENDILLV GDDPWEEFVN CVQNIKILSS VEVQQMSLDG DLAAIPTTNQ ACSETDSGNA WKVHYEDTSA AASFNR
Arabidopsis Description
ARF19Auxin response factor 19 [Source:UniProtKB/Swiss-Prot;Acc:Q8RYC8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.