Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc07g042260.2.1 | Tomato | nucleus | 95.25 | 96.92 |
| VIT_11s0016g00640.t01 | Wine grape | nucleus | 70.44 | 70.56 |
| KRH37536 | Soybean | nucleus | 66.98 | 68.89 |
| KRH02575 | Soybean | nucleus | 67.5 | 68.75 |
| KRH12587 | Soybean | nucleus | 66.55 | 68.63 |
| KRH19355 | Soybean | nucleus | 66.72 | 68.26 |
| CDY41030 | Canola | nucleus | 57.65 | 63.04 |
| Bra025720.1-P | Field mustard | nucleus | 56.96 | 62.82 |
| CDY26690 | Canola | nucleus | 56.96 | 62.82 |
| AT1G19220.1 | Thale cress | nucleus | 58.43 | 62.25 |
| CDX83778 | Canola | nucleus | 54.62 | 61.96 |
| CDX96672 | Canola | nucleus | 54.54 | 61.86 |
| Bra016517.1-P | Field mustard | nucleus | 53.93 | 61.78 |
| GSMUA_Achr9P18170_001 | Banana | nucleus | 45.55 | 61.71 |
| Bra020125.1-P | Field mustard | nucleus | 58.08 | 61.09 |
| CDX92437 | Canola | nucleus | 54.45 | 60.58 |
| AT5G20730.1 | Thale cress | nucleus | 60.59 | 60.17 |
| GSMUA_Achr3P10240_001 | Banana | nucleus | 32.24 | 60.16 |
| CDY45069 | Canola | nucleus | 57.04 | 59.3 |
| CDY16560 | Canola | nucleus | 49.52 | 54.99 |
| Os06t0196700-02 | Rice | nucleus | 48.49 | 53.18 |
| KXG19536 | Sorghum | nucleus | 48.06 | 52.8 |
| TraesCS7D01G161900.1 | Wheat | nucleus | 48.49 | 52.68 |
| TraesCS7A01G160800.1 | Wheat | nucleus | 48.49 | 52.63 |
| Zm00001d045026_P002 | Maize | nucleus | 47.62 | 52.33 |
| TraesCS7B01G065800.2 | Wheat | plastid | 48.23 | 51.62 |
| HORVU7Hr1G033820.5 | Barley | nucleus | 46.85 | 50.84 |
| PGSC0003DMT400025312 | Potato | nucleus | 45.98 | 47.76 |
| PGSC0003DMT400035592 | Potato | nucleus | 43.99 | 46.4 |
| Bra002327.1-P | Field mustard | nucleus | 57.13 | 45.93 |
| PGSC0003DMT400041127 | Potato | nucleus | 33.97 | 44.06 |
| PGSC0003DMT400074169 | Potato | nucleus | 33.45 | 43.78 |
| PGSC0003DMT400048034 | Potato | nucleus | 28.44 | 43.75 |
| PGSC0003DMT400009660 | Potato | nucleus | 32.41 | 40.37 |
| PGSC0003DMT400048032 | Potato | nucleus | 5.53 | 39.26 |
| PGSC0003DMT400053380 | Potato | nucleus | 21.69 | 38.38 |
| PGSC0003DMT400031965 | Potato | nucleus | 19.88 | 35.11 |
| PGSC0003DMT400000345 | Potato | nucleus | 20.66 | 34.89 |
| PGSC0003DMT400037454 | Potato | nucleus | 22.47 | 31.36 |
| PGSC0003DMT400036765 | Potato | nucleus | 22.82 | 31.24 |
| PGSC0003DMT400020839 | Potato | nucleus | 20.57 | 29.35 |
Protein Annotations
| EntrezGene:102594021 | MapMan:15.5.5.1 | Gene3D:2.30.30.1040 | Gene3D:2.40.330.10 | Gene3D:3.10.20.90 | InterPro:AUX/IAA_dom |
| InterPro:Auxin_resp | InterPro:B3_DNA-bd | ncoils:Coil | InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009725 | GO:GO:0009734 |
| GO:GO:0009987 | InterPro:IPR000270 | InterPro:IPR003340 | InterPro:IPR015300 | UniProt:M0ZQX0 | InterPro:PB1_dom |
| PFAM:PF02309 | PFAM:PF02362 | PFAM:PF06507 | EnsemblPlantsGene:PGSC0003DMG400002392 | PGSC:PGSC0003DMG400002392 | EnsemblPlants:PGSC0003DMT400006151 |
| PFscan:PS50863 | PFscan:PS51745 | PANTHER:PTHR31384 | PANTHER:PTHR31384:SF21 | SMART:SM01019 | SUPFAM:SSF101936 |
| SUPFAM:SSF54277 | UniParc:UPI000294DDE7 | RefSeq:XP_006353789.1 | SEG:seg | : | : |
Description
Auxin response factor 7 [Source:PGSC_GENE;Acc:PGSC0003DMG400002392]
Coordinates
chr7:-:40013666..40023546
Molecular Weight (calculated)
130154.0 Da
IEP (calculated)
6.607
GRAVY (calculated)
-0.777
Length
1157 amino acids
Sequence
(BLAST)
(BLAST)
0001: MKAPSNGYLP NSGEGERKLM NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE TDGIPSYPNL PSKLICMLHN VTLHADTETD EVYAQMTLQP
0101: VNKYDQEALL LSDMGLKQNR QPAEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDYAMQ PPAQELMARD LHDQAWTFRH IYRGQPKRHL LTTGWSVFIS
0201: SKRLCAGDSV LFIRDDKSQL LLGIKRTNRQ QPALSSSVIS SDSMHIGILA AAAHAAANNS PFTIFYNPRA SPSEFVIPLA KYNKAMYAQV SLGMRFRMMF
0301: ETEESGVRRY MGTITGVSDL DPIRWKSSEW RNLQVGWDES TAGERPSRVS IWDIEPVVTP FYICPPPFFR PKFPKQPNFP GDESDIENVL KRGMPWINDE
0401: LGLKDSQNSI FPGLSLVQWM SMQQNNHVPV AQSGLPSVLH SNIGSDDHSK LLNFQSPTLA TPGLQFNKPN QLNQPFGQIQ QPPLAWAQQQ QQSLQSPVSA
0501: QQQQPTLQQQ QQQHTLQQQQ PTLQQQQHTL QQQQHTLQQQ QQQQQQQQHT LQQQQQQQHT LQQQQQQHTL QQQQQQQHTL QHQQQHTLQQ SQQHMLQQQP
0601: QLHQQAQQQL QQQQRPSQQQ QLTGNSSPVN RCVSPNQIPN QTFPQAAVYG QLQQQQVLSA STQSQQNVPV NRNPFPSTSL AQDFQFQQQV EQQSNLLQKS
0701: QQQQTIPQQV PLQLLQQSLM QRPQVQPSSQ QSLTEQQLQL QLLNKLQQQQ QQQQQQAQLL SPVSSTLEPR MPQQQQNRQP QELQIAHQQL SSNIVTTATH
0801: LQSTHHAFNQ LQSQHKSPIT IKALSGGTDG DAPSCSTSPS TNNFQVSPPN FLTKNQGQAI LVDESVVDPS QEQNKSEFRI KHELVFSKGS EQSKYKGNNT
0901: ENLEAASSTT SYGLDSSGFN FSLPALCVDG DVQSHSRNSL PSAANNIDGL NPDALLSRDY DSGKDMQNLF SPFGNAPRDI ETELSDAGIN SQQFGVPNMA
1001: YKPRCTNDLA VNDNGVLNNN AWTNQTQRMR TYTKVQKRGS VGRTIDVTRY IGYDELRHDL ARMFGIEGQL EDPQRTEWKL VYVDHENDML LVGDDPWEEF
1101: VSCVQSIKIL SSAEVQQMSL DGDLGNVPVP NQASSGTDSG NAWKGHYDDN SAASFNR
0101: VNKYDQEALL LSDMGLKQNR QPAEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDYAMQ PPAQELMARD LHDQAWTFRH IYRGQPKRHL LTTGWSVFIS
0201: SKRLCAGDSV LFIRDDKSQL LLGIKRTNRQ QPALSSSVIS SDSMHIGILA AAAHAAANNS PFTIFYNPRA SPSEFVIPLA KYNKAMYAQV SLGMRFRMMF
0301: ETEESGVRRY MGTITGVSDL DPIRWKSSEW RNLQVGWDES TAGERPSRVS IWDIEPVVTP FYICPPPFFR PKFPKQPNFP GDESDIENVL KRGMPWINDE
0401: LGLKDSQNSI FPGLSLVQWM SMQQNNHVPV AQSGLPSVLH SNIGSDDHSK LLNFQSPTLA TPGLQFNKPN QLNQPFGQIQ QPPLAWAQQQ QQSLQSPVSA
0501: QQQQPTLQQQ QQQHTLQQQQ PTLQQQQHTL QQQQHTLQQQ QQQQQQQQHT LQQQQQQQHT LQQQQQQHTL QQQQQQQHTL QHQQQHTLQQ SQQHMLQQQP
0601: QLHQQAQQQL QQQQRPSQQQ QLTGNSSPVN RCVSPNQIPN QTFPQAAVYG QLQQQQVLSA STQSQQNVPV NRNPFPSTSL AQDFQFQQQV EQQSNLLQKS
0701: QQQQTIPQQV PLQLLQQSLM QRPQVQPSSQ QSLTEQQLQL QLLNKLQQQQ QQQQQQAQLL SPVSSTLEPR MPQQQQNRQP QELQIAHQQL SSNIVTTATH
0801: LQSTHHAFNQ LQSQHKSPIT IKALSGGTDG DAPSCSTSPS TNNFQVSPPN FLTKNQGQAI LVDESVVDPS QEQNKSEFRI KHELVFSKGS EQSKYKGNNT
0901: ENLEAASSTT SYGLDSSGFN FSLPALCVDG DVQSHSRNSL PSAANNIDGL NPDALLSRDY DSGKDMQNLF SPFGNAPRDI ETELSDAGIN SQQFGVPNMA
1001: YKPRCTNDLA VNDNGVLNNN AWTNQTQRMR TYTKVQKRGS VGRTIDVTRY IGYDELRHDL ARMFGIEGQL EDPQRTEWKL VYVDHENDML LVGDDPWEEF
1101: VSCVQSIKIL SSAEVQQMSL DGDLGNVPVP NQASSGTDSG NAWKGHYDDN SAASFNR
0001: MKAPSNGFLP SSNEGEKKPI NSQLWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKQ TDFIPNYPNL PSKLICLLHS VTLHADTETD EVYAQMTLQP
0101: VNKYDREALL ASDMGLKLNR QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDTTWTFRH IYRGQPKRHL LTTGWSVFVS
0201: TKRLFAGDSV LFVRDEKSQL MLGIRRANRQ TPTLSSSVIS SDSMHIGILA AAAHANANSS PFTIFFNPRA SPSEFVVPLA KYNKALYAQV SLGMRFRMMF
0301: ETEDCGVRRY MGTVTGISDL DPVRWKGSQW RNLQVGWDES TAGDRPSRVS IWEIEPVITP FYICPPPFFR PKYPRQPGMP DDELDMENAF KRAMPWMGED
0401: FGMKDAQSSM FPGLSLVQWM SMQQNNPLSG SATPQLPSAL SSFNLPNNFA SNDPSKLLNF QSPNLSSANS QFNKPNTVNH ISQQMQAQPA MVKSQQQQQQ
0501: QQQQHQHQQQ QLQQQQQLQM SQQQVQQQGI YNNGTIAVAN QVSCQSPNQP TGFSQSQLQQ QSMLPTGAKM THQNINSMGN KGLSQMTSFA QEMQFQQQLE
0601: MHNSSQLLRN QQEQSSLHSL QQNLSQNPQQ LQMQQQSSKP SPSQQLQLQL LQKLQQQQQQ QSIPPVSSSL QPQLSALQQT QSHQLQQLLS SQNQQPLAHG
0701: NNSFPASTFM QPPQIQVSPQ QQGQMSNKNL VAAGRSHSGH TDGEAPSCST SPSANNTGHD NVSPTNFLSR NQQQGQAASV SASDSVFERA SNPVQELYTK
0801: TESRISQGMM NMKSAGEHFR FKSAVTDQID VSTAGTTYCP DVVGPVQQQQ TFPLPSFGFD GDCQSHHPRN NLAFPGNLEA VTSDPLYSQK DFQNLVPNYG
0901: NTPRDIETEL SSAAISSQSF GIPSIPFKPG CSNEVGGIND SGIMNGGGLW PNQTQRMRTY TKVQKRGSVG RSIDVTRYSG YDELRHDLAR MFGIEGQLED
1001: PLTSDWKLVY TDHENDILLV GDDPWEEFVN CVQNIKILSS VEVQQMSLDG DLAAIPTTNQ ACSETDSGNA WKVHYEDTSA AASFNR
0101: VNKYDREALL ASDMGLKLNR QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDTTWTFRH IYRGQPKRHL LTTGWSVFVS
0201: TKRLFAGDSV LFVRDEKSQL MLGIRRANRQ TPTLSSSVIS SDSMHIGILA AAAHANANSS PFTIFFNPRA SPSEFVVPLA KYNKALYAQV SLGMRFRMMF
0301: ETEDCGVRRY MGTVTGISDL DPVRWKGSQW RNLQVGWDES TAGDRPSRVS IWEIEPVITP FYICPPPFFR PKYPRQPGMP DDELDMENAF KRAMPWMGED
0401: FGMKDAQSSM FPGLSLVQWM SMQQNNPLSG SATPQLPSAL SSFNLPNNFA SNDPSKLLNF QSPNLSSANS QFNKPNTVNH ISQQMQAQPA MVKSQQQQQQ
0501: QQQQHQHQQQ QLQQQQQLQM SQQQVQQQGI YNNGTIAVAN QVSCQSPNQP TGFSQSQLQQ QSMLPTGAKM THQNINSMGN KGLSQMTSFA QEMQFQQQLE
0601: MHNSSQLLRN QQEQSSLHSL QQNLSQNPQQ LQMQQQSSKP SPSQQLQLQL LQKLQQQQQQ QSIPPVSSSL QPQLSALQQT QSHQLQQLLS SQNQQPLAHG
0701: NNSFPASTFM QPPQIQVSPQ QQGQMSNKNL VAAGRSHSGH TDGEAPSCST SPSANNTGHD NVSPTNFLSR NQQQGQAASV SASDSVFERA SNPVQELYTK
0801: TESRISQGMM NMKSAGEHFR FKSAVTDQID VSTAGTTYCP DVVGPVQQQQ TFPLPSFGFD GDCQSHHPRN NLAFPGNLEA VTSDPLYSQK DFQNLVPNYG
0901: NTPRDIETEL SSAAISSQSF GIPSIPFKPG CSNEVGGIND SGIMNGGGLW PNQTQRMRTY TKVQKRGSVG RSIDVTRYSG YDELRHDLAR MFGIEGQLED
1001: PLTSDWKLVY TDHENDILLV GDDPWEEFVN CVQNIKILSS VEVQQMSLDG DLAAIPTTNQ ACSETDSGNA WKVHYEDTSA AASFNR
Arabidopsis Description
ARF19Auxin response factor 19 [Source:UniProtKB/Swiss-Prot;Acc:Q8RYC8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.