Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g121060.2.1 | Tomato | nucleus | 90.81 | 89.55 |
| KRH09948 | Soybean | nucleus | 58.3 | 51.56 |
| GSMUA_Achr3P16300_001 | Banana | endoplasmic reticulum, golgi, mitochondrion, plastid | 40.99 | 50.88 |
| TraesCS1D01G123500.1 | Wheat | nucleus | 39.93 | 49.78 |
| TraesCS1A01G122600.2 | Wheat | nucleus | 39.58 | 49.78 |
| KRH44271 | Soybean | nucleus | 54.77 | 49.52 |
| KRH47203 | Soybean | nucleus | 54.77 | 48.9 |
| Zm00001d010360_P001 | Maize | cytosol, nucleus | 39.22 | 48.68 |
| CDY22876 | Canola | nucleus | 43.46 | 48.62 |
| Bra018938.1-P | Field mustard | nucleus | 43.11 | 48.22 |
| CDY33844 | Canola | nucleus | 43.11 | 48.22 |
| KRH23388 | Soybean | nucleus | 57.95 | 47.4 |
| HORVU1Hr1G028170.4 | Barley | cytosol, nucleus, plastid | 40.99 | 46.96 |
| CDX87863 | Canola | nucleus | 42.05 | 46.85 |
| AT1G51950.1 | Thale cress | nucleus | 43.46 | 46.07 |
| Zm00001d039513_P001 | Maize | cytosol, nucleus, plastid | 37.1 | 45.85 |
| Os01t0190300-01 | Rice | nucleus | 38.52 | 45.8 |
| AT3G16500.1 | Thale cress | nucleus | 43.46 | 45.72 |
| Bra014303.1-P | Field mustard | nucleus | 43.46 | 45.56 |
| GSMUA_Achr5P09310_001 | Banana | endoplasmic reticulum | 37.81 | 45.53 |
| CDY64626 | Canola | cytosol | 43.11 | 45.35 |
| CDY43104 | Canola | nucleus | 42.76 | 45.32 |
| CDY46538 | Canola | nucleus | 43.11 | 45.19 |
| Bra021184.1-P | Field mustard | nucleus | 42.4 | 44.61 |
| CDY34957 | Canola | nucleus | 42.4 | 44.61 |
| TraesCS3B01G127400.1 | Wheat | nucleus | 36.04 | 44.35 |
| EES17832 | Sorghum | nucleus | 37.81 | 44.21 |
| CDY53439 | Canola | nucleus | 42.4 | 43.96 |
| TraesCS3D01G110200.1 | Wheat | nucleus | 35.34 | 43.48 |
| CDX75884 | Canola | cytosol | 41.34 | 43.17 |
| CDX82399 | Canola | nucleus | 41.34 | 43.01 |
| Bra001634.1-P | Field mustard | nucleus | 41.34 | 43.01 |
| CDX92077 | Canola | nucleus | 42.76 | 42.46 |
| Bra022164.1-P | Field mustard | nucleus | 42.76 | 42.46 |
| HORVU3Hr1G019750.4 | Barley | cytosol, nucleus, plastid | 36.4 | 42.04 |
| VIT_09s0002g03410.t01 | Wine grape | nucleus | 64.31 | 41.46 |
| Zm00001d037691_P003 | Maize | cytosol, nucleus | 36.04 | 41.3 |
| TraesCS3A01G108400.1 | Wheat | cytosol, nucleus, peroxisome | 35.69 | 40.08 |
| Os02t0228900-01 | Rice | nucleus | 42.4 | 40.0 |
| OQU84670 | Sorghum | nucleus | 40.99 | 39.73 |
| Zm00001d016277_P002 | Maize | nucleus | 41.34 | 39.13 |
| Os01t0741900-01 | Rice | nucleus | 45.58 | 38.51 |
| GSMUA_AchrUn_... | Banana | nucleus | 41.7 | 38.31 |
| TraesCS3D01G276600.1 | Wheat | cytosol, mitochondrion, nucleus | 45.23 | 38.21 |
| GSMUA_Achr7P13680_001 | Banana | nucleus | 48.41 | 37.33 |
| TraesCS3B01G310500.1 | Wheat | cytosol, mitochondrion, nucleus | 45.23 | 37.32 |
| TraesCS3A01G276500.1 | Wheat | cytosol, mitochondrion, nucleus | 44.88 | 37.24 |
| HORVU3Hr1G070620.5 | Barley | cytosol, mitochondrion, nucleus | 45.94 | 36.83 |
| PGSC0003DMT400052767 | Potato | cytosol, extracellular, nucleus | 11.66 | 36.26 |
| Os05t0523300-01 | Rice | nucleus | 40.99 | 35.47 |
| TraesCS1A01G343300.1 | Wheat | nucleus | 36.4 | 35.03 |
| TraesCS1D01G345400.1 | Wheat | nucleus | 36.4 | 34.92 |
| Zm00001d043515_P002 | Maize | cytosol, mitochondrion, nucleus | 43.82 | 34.73 |
| TraesCS1B01G356600.1 | Wheat | cytosol | 36.4 | 34.68 |
| KXG33336 | Sorghum | nucleus | 43.82 | 33.97 |
| Zm00001d038784_P001 | Maize | nucleus | 41.34 | 33.14 |
| KXG22376 | Sorghum | nucleus | 39.22 | 32.17 |
| OQU86163 | Sorghum | golgi, plastid | 37.1 | 29.33 |
| PGSC0003DMT400075427 | Potato | nucleus | 24.03 | 29.31 |
| PGSC0003DMT400003784 | Potato | nucleus | 26.15 | 27.31 |
| PGSC0003DMT400079375 | Potato | cytosol | 18.37 | 25.74 |
| PGSC0003DMT400022133 | Potato | nucleus | 27.56 | 24.76 |
| PGSC0003DMT400035770 | Potato | cytosol | 18.02 | 23.29 |
Protein Annotations
| EntrezGene:102585218 | MapMan:11.2.2.1.2 | Gene3D:3.10.20.90 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | InterPro:IPR000270 |
| UniProt:M0ZRV4 | InterPro:PB1_dom | PFAM:PF02309 | EnsemblPlantsGene:PGSC0003DMG400002608 | PGSC:PGSC0003DMG400002608 | EnsemblPlants:PGSC0003DMT400006709 |
| PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF2 | SUPFAM:SSF54277 | UniParc:UPI0002967764 | RefSeq:XP_015162257.1 |
Description
ARF domain class transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400002608]
Coordinates
chr3:+:60418339..60421290
Molecular Weight (calculated)
31395.9 Da
IEP (calculated)
9.627
GRAVY (calculated)
-0.713
Length
283 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGYSRKWVM QRGEEINHGN SEEKKLELRL GPPNGDWSSS EKDETFFPFS YISKDNHAQK FSSFLQLQST AQKQSQMVQE SSQTVCTKTA DLQSTEKKKA
101: FSQTATVHNS AQKRTAPAPV VGWPPVRSFR KNLASSSSVK SATETQNVVP NKSANKKPME ICQKGLFVKI NMDGIPIGRK VDLKAYDSYD KLSSAVDQLF
201: RGLLAAQNNP STGGSEKKED GETAISGLLD GSGEYTLVYE DNEGDRMLVG DVPWHMFVST VKRLRVLKSS DLSTLTRATK QLN
101: FSQTATVHNS AQKRTAPAPV VGWPPVRSFR KNLASSSSVK SATETQNVVP NKSANKKPME ICQKGLFVKI NMDGIPIGRK VDLKAYDSYD KLSSAVDQLF
201: RGLLAAQNNP STGGSEKKED GETAISGLLD GSGEYTLVYE DNEGDRMLVG DVPWHMFVST VKRLRVLKSS DLSTLTRATK QLN
001: MEGCPRNREI GPKLLDLIPQ GRKWYQEDKN NTDQEKKLEL RLGPPGGDEE DHSAIKKKNT EIRNIKKETE DKSFHCFNGN HFSPSNKTTS VPHISQKRTA
101: PGPVVGWPPV RSFRKNLAST SSSKLGNESS HGGQINKSDD GEKQVETKKE GMFVKINMDG VPIGRKVDLN AYNSYEQLSF VVDKLFRGLL AAQRDISDGQ
201: GEEKPIIGLL DGKGEFTLTY EDNEGDKMLV GDVPWQMFVS SVKRLRVIKS SEISSALTFG CSKQEKMMH
101: PGPVVGWPPV RSFRKNLAST SSSKLGNESS HGGQINKSDD GEKQVETKKE GMFVKINMDG VPIGRKVDLN AYNSYEQLSF VVDKLFRGLL AAQRDISDGQ
201: GEEKPIIGLL DGKGEFTLTY EDNEGDKMLV GDVPWQMFVS SVKRLRVIKS SEISSALTFG CSKQEKMMH
Arabidopsis Description
IAA26Auxin-responsive protein IAA26 [Source:UniProtKB/Swiss-Prot;Acc:Q8LAL2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.