Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra018938.1-P | Field mustard | nucleus | 97.63 | 97.63 |
| CDY33844 | Canola | nucleus | 92.89 | 92.89 |
| CDX87863 | Canola | nucleus | 83.4 | 83.07 |
| CDY53439 | Canola | nucleus | 87.35 | 80.95 |
| CDY46538 | Canola | nucleus | 86.17 | 80.74 |
| AT1G51950.1 | Thale cress | nucleus | 81.03 | 76.78 |
| CDY34957 | Canola | nucleus | 63.64 | 59.85 |
| CDY43104 | Canola | nucleus | 62.85 | 59.55 |
| CDY64626 | Canola | cytosol | 62.45 | 58.74 |
| CDX75884 | Canola | cytosol | 61.66 | 57.56 |
| CDX82399 | Canola | nucleus | 60.87 | 56.62 |
| CDX92077 | Canola | nucleus | 60.87 | 54.04 |
| CDX88204 | Canola | cytosol, nucleus, peroxisome | 34.78 | 50.57 |
| CDX80545 | Canola | cytosol, nucleus, plastid | 34.78 | 50.57 |
| CDX87072 | Canola | cytosol | 33.99 | 49.14 |
| TraesCS1A01G122600.2 | Wheat | nucleus | 39.92 | 44.89 |
| TraesCS1D01G123500.1 | Wheat | nucleus | 39.92 | 44.49 |
| Solyc03g121060.2.1 | Tomato | nucleus | 49.41 | 43.55 |
| PGSC0003DMT400006709 | Potato | nucleus | 48.62 | 43.46 |
| CDY19790 | Canola | cytosol | 33.2 | 43.08 |
| Zm00001d010360_P001 | Maize | cytosol, nucleus | 38.74 | 42.98 |
| EES17832 | Sorghum | nucleus | 40.32 | 42.15 |
| TraesCS3B01G127400.1 | Wheat | nucleus | 37.94 | 41.74 |
| Zm00001d039513_P001 | Maize | cytosol, nucleus, plastid | 37.55 | 41.48 |
| GSMUA_Achr3P16300_001 | Banana | endoplasmic reticulum, golgi, mitochondrion, plastid | 37.15 | 41.23 |
| Os01t0190300-01 | Rice | nucleus | 38.74 | 41.18 |
| KRH09948 | Soybean | nucleus | 51.38 | 40.62 |
| TraesCS3D01G110200.1 | Wheat | nucleus | 36.76 | 40.43 |
| HORVU1Hr1G028170.4 | Barley | cytosol, nucleus, plastid | 39.13 | 40.08 |
| Zm00001d037691_P003 | Maize | cytosol, nucleus | 38.74 | 39.68 |
| GSMUA_Achr5P09310_001 | Banana | endoplasmic reticulum | 36.36 | 39.15 |
| HORVU3Hr1G019750.4 | Barley | cytosol, nucleus, plastid | 37.55 | 38.78 |
| KRH23388 | Soybean | nucleus | 50.99 | 37.28 |
| KRH47203 | Soybean | nucleus | 46.64 | 37.22 |
| TraesCS3A01G108400.1 | Wheat | cytosol, nucleus, peroxisome | 36.76 | 36.9 |
| CDY51701 | Canola | nucleus | 29.25 | 36.82 |
| KRH44271 | Soybean | nucleus | 45.45 | 36.74 |
| Os02t0228900-01 | Rice | nucleus | 43.48 | 36.67 |
| CDY59182 | Canola | nucleus | 32.41 | 36.44 |
| CDY53196 | Canola | nucleus | 32.41 | 36.12 |
| CDY46895 | Canola | cytosol | 10.28 | 36.11 |
| OQU84670 | Sorghum | nucleus | 41.11 | 35.62 |
| Zm00001d016277_P002 | Maize | nucleus | 41.5 | 35.12 |
| CDY19477 | Canola | nucleus | 32.41 | 34.89 |
| CDY17158 | Canola | nucleus | 32.41 | 34.75 |
| GSMUA_AchrUn_... | Banana | nucleus | 42.29 | 34.74 |
| CDX89814 | Canola | nucleus | 31.62 | 34.04 |
| CDX84693 | Canola | nucleus | 32.41 | 33.88 |
| CDX79522 | Canola | nucleus | 32.41 | 33.33 |
| CDY18243 | Canola | nucleus | 30.43 | 33.33 |
| GSMUA_Achr7P13680_001 | Banana | nucleus | 47.43 | 32.7 |
| CDY38374 | Canola | nucleus | 30.43 | 32.35 |
| TraesCS1B01G356600.1 | Wheat | cytosol | 37.94 | 32.32 |
| TraesCS1A01G343300.1 | Wheat | nucleus | 37.15 | 31.97 |
| TraesCS1D01G345400.1 | Wheat | nucleus | 37.15 | 31.86 |
| Os05t0523300-01 | Rice | nucleus | 40.71 | 31.5 |
| CDY35203 | Canola | nucleus | 30.04 | 31.28 |
| CDY71609 | Canola | nucleus, plastid | 19.37 | 31.21 |
| CDX95843 | Canola | plastid | 18.97 | 30.97 |
| CDX82361 | Canola | cytosol, plastid | 18.97 | 30.57 |
| CDX92140 | Canola | nucleus, plastid | 18.97 | 30.38 |
| VIT_09s0002g03410.t01 | Wine grape | nucleus | 52.57 | 30.3 |
| TraesCS3D01G276600.1 | Wheat | cytosol, mitochondrion, nucleus | 39.53 | 29.85 |
| TraesCS3B01G310500.1 | Wheat | cytosol, mitochondrion, nucleus | 39.92 | 29.45 |
| Os01t0741900-01 | Rice | nucleus | 38.74 | 29.25 |
| TraesCS3A01G276500.1 | Wheat | cytosol, mitochondrion, nucleus | 39.13 | 29.03 |
| Zm00001d043515_P002 | Maize | cytosol, mitochondrion, nucleus | 39.92 | 28.29 |
| KXG33336 | Sorghum | nucleus | 40.71 | 28.22 |
| HORVU3Hr1G070620.5 | Barley | cytosol, mitochondrion, nucleus | 38.74 | 27.76 |
| CDY25089 | Canola | plastid | 18.97 | 27.75 |
| CDX67874 | Canola | plastid | 18.58 | 27.17 |
| KXG22376 | Sorghum | nucleus | 36.76 | 26.96 |
| OQU86163 | Sorghum | golgi, plastid | 37.94 | 26.82 |
| CDY48005 | Canola | cytosol, plastid | 18.18 | 26.44 |
| CDY58757 | Canola | plastid | 17.79 | 26.16 |
| Zm00001d038784_P001 | Maize | nucleus | 36.36 | 26.06 |
| CDY27511 | Canola | cytosol, plastid | 17.79 | 25.86 |
| CDX89844 | Canola | cytosol, nucleus, plastid | 27.27 | 25.46 |
| CDY11402 | Canola | plastid | 17.79 | 25.42 |
| CDY18205 | Canola | cytosol, nucleus, plastid | 26.88 | 25.09 |
| CDY46058 | Canola | plastid | 15.81 | 23.95 |
| CDX68829 | Canola | nucleus | 18.97 | 21.05 |
| CDY13478 | Canola | nucleus | 18.97 | 19.75 |
| CDX92888 | Canola | nucleus | 31.23 | 19.51 |
| CDX75231 | Canola | nucleus | 17.79 | 19.48 |
| CDX72351 | Canola | nucleus | 18.97 | 19.43 |
Protein Annotations
| MapMan:11.2.2.1.2 | Gene3D:3.10.20.90 | GO:A0A078GBW7 | UniProt:A0A078GBW7 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA |
| EnsemblPlants:CDY22876 | ProteinID:CDY22876 | ProteinID:CDY22876.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00021236001 | InterPro:IPR000270 | InterPro:PB1_dom |
| PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF2 | SUPFAM:SSF54277 | UniParc:UPI0004EDF4A2 |
Description
BnaA06g02010DAuxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:A0A078GBW7]
Coordinates
chrLK032136:+:620478..622158
Molecular Weight (calculated)
28068.1 Da
IEP (calculated)
9.656
GRAVY (calculated)
-0.809
Length
253 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGYSRNWFR DDKASVYNSE EKKLELKLGP PGEDEAGSSM IRHIKKEPKD KSILSLAPNH FSSPSTTNKT TSQKRTAPGP VVGWPPVRSF RKNLTNGSSS
101: KLGNESTSNG VVLKNQKCDD DNAREKPMGA NRQGGLFVKI NMHGVPIGRK VDLSAHDSYE QLSFTVDKLF RGLLAAQRES SPFGEEERPI TGLLDGNGEY
201: TLTYEDNEGD KMLVGDVPWH MFVSSVKRLR VIKTSEISSA LTYGNGKQEK MRS
101: KLGNESTSNG VVLKNQKCDD DNAREKPMGA NRQGGLFVKI NMHGVPIGRK VDLSAHDSYE QLSFTVDKLF RGLLAAQRES SPFGEEERPI TGLLDGNGEY
201: TLTYEDNEGD KMLVGDVPWH MFVSSVKRLR VIKTSEISSA LTYGNGKQEK MRS
001: MEGYSRNGEI SPKLLDLMIP QERRNWFHDE KNSVFKTEEK KLELKLGPPG EEDDDESMIR HMKKEPKDKS ILSLAGKYFS PSSTKTTSHK RTAPGPVVGW
101: PPVRSFRKNL ASGSSSKLGN DSTTSNGVTL KNQKCDAAAK TTEPKRQGGM FVKINMYGVP IGRKVDLSAH NSYEQLSFTV DKLFRGLLAA QRDFPSSIED
201: EKPITGLLDG NGEYTLTYED NEGDKMLVGD VPWQMFVSSV KRLRVIKTSE ISSALTYGNG KQEKMRR
101: PPVRSFRKNL ASGSSSKLGN DSTTSNGVTL KNQKCDAAAK TTEPKRQGGM FVKINMYGVP IGRKVDLSAH NSYEQLSFTV DKLFRGLLAA QRDFPSSIED
201: EKPITGLLDG NGEYTLTYED NEGDKMLVGD VPWQMFVSSV KRLRVIKTSE ISSALTYGNG KQEKMRR
Arabidopsis Description
IAA18Auxin-responsive protein IAA18 [Source:UniProtKB/Swiss-Prot;Acc:O24408]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.