CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX89437
CDX90850
CDX94540
CDY03145
CDY03368
CDY12039
CDY16684
CDY21291
CDY71809

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G55220.1	CDY03145	AT1G34430.1	21798944
AT5G55220.1	CDY12039	AT1G34430.1	21798944
AT5G55220.1	CDX90850	AT4G04020.1	21798944
AT5G55220.1	CDX94540	AT4G04020.1	21798944
AT5G55220.1	CDY16684	AT4G04020.1	21798944
AT5G55220.1	CDY21291	AT4G04020.1	21798944
AT5G55220.1	CDY71809	AT4G04020.1	21798944
AT5G55220.1	CDX89437	AT4G25200.1	21798944
AT5G55220.1	CDY03368	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY20778	Canola	plastid	93.25	93.76
AT5G55220.1	Thale cress	plastid	81.93	82.08
CDY19904	Canola	plastid	20.26	68.52
VIT_19s0090g01210.t01	Wine grape	plastid	60.4	61.75
Solyc07g064950.2.1	Tomato	nucleus, plastid	58.76	61.1
KRH73811	Soybean	plastid	60.4	61.07
KRH14319	Soybean	plastid	59.31	59.63
PGSC0003DMT400057431	Potato	plastid	58.94	59.16
CDY19903	Canola	extracellular	14.78	57.86
KRH26213	Soybean	cytosol, extracellular, nucleus, plastid	11.68	55.17
HORVU7Hr1G045680.1	Barley	plastid	51.28	53.42
Os06t0308000-01	Rice	plastid	52.01	53.07
TraesCS7D01G224400.1	Wheat	plastid	50.91	53.04
TraesCS7B01G129300.1	Wheat	plastid	50.73	52.85
TraesCS7A01G222800.1	Wheat	plastid	50.55	52.66
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane	54.01	51.93
Zm00001d023292_P001	Maize	plastid	49.82	51.7
EES16569	Sorghum	plastid	48.91	51.05
CDY17312	Canola	endoplasmic reticulum	35.58	50.91
KRH14348	Soybean	endoplasmic reticulum, extracellular, plasma membrane	19.34	40.46
Zm00001d000318_P001	Maize	peroxisome	14.96	28.87
Zm00001d047056_P001	Maize	plastid	16.42	26.79
Zm00001d013704_P001	Maize	plastid	8.76	21.33

Protein Annotations

Gene3D:1.10.3120.10	MapMan:18.12.3	Gene3D:3.10.50.40	Gene3D:3.30.70.1050	GO:A0A078F0E9	EnsemblPlants:CDY06597
ProteinID:CDY06597	ProteinID:CDY06597.1	ncoils:Coil	GO:GO:0006457	GO:GO:0006810	GO:GO:0008150
GO:GO:0009987	GO:GO:0015031	EnsemblPlantsGene:GSBRNA2T00122736001	InterPro:IPR001179	InterPro:IPR036611	InterPro:IPR037041
HAMAP:MF_00303	PFAM:PF05697	PFAM:PF05698	InterPro:PPIase_FKBP_dom	PFscan:PS50059	PANTHER:PTHR30560
PANTHER:PTHR30560:SF3	SUPFAM:SSF102735	SUPFAM:SSF109998	SUPFAM:SSF54534	TIGRFAMs:TIGR00115	InterPro:Trig_fac
InterPro:Trigger_fac_C	InterPro:Trigger_fac_C_sf	InterPro:Trigger_fac_ribosome-bd_bac	InterPro:Trigger_fac_ribosome-bd_sf	InterPro:Trigger_fact/SurA_dom_sf	UniParc:UPI0004EDEF7A
SEG:seg	:	:	:	:	:

Description

BnaC02g13210D

Coordinates

chrLK031971:-:627581..630464

Molecular Weight (calculated)

61570.7 Da

IEP (calculated)

5.171

GRAVY (calculated)

-0.425

Length

548 amino acids

Sequence
(BLAST)

001: MELCVISSIN PFHSSSTRRL GSRRLFQSDS LFLSRDGCSL LRFHGRLKKP IKPLELSCAA KKIGGSGGVR RSAASTKAAP AVEPSVKEDK LPAELQVKET
101: QAPNSSVKLS VEVPAIVCED CYQRVLTEFM KMAKVPGFRP GKRVPENIIV GFVGRPYVLR ATVESILKRT LPHAMESVTG KALKDSIQIV SSFPEMEKAY
201: SQLKTLSYEV VVDVVPELKW NPENGYKDMK VVVELGDEID AKKACERQLR QKYKSLGALK IVTDRGLQVG DLAVIDISAT TIDEDGSTGE AIPDAESKGF
301: HFDTEEGNRL LPGFLDSILG IRAGESKSFS LVFPESWKQE SLRGQRAQFT VDCKELFYRD LPTLDDSLAD KLLPGCTTLK EVEETLTKRC QEMEEEAKEQ
401: ATDNAILEQI RKMVEVEIPQ SLFEEQGRQF YGARLLEIQA SGNMKLTEDQ LASLSSQKSV NEFLETQRES ITNIIKQNLA VGDIFKRENL EFSTDELVKE
501: VENSVTEFKK HKQEYDEERV KDQVQEILEG AKVLEWLKER AEIQYITR

Best Arabidopsis Sequence Match ( AT5G55220.1 )
(BLAST)

001: MELCVISTTT TVKAINPFLP SITRRVSSRL FQSDSVLQFG GRLKKPISRP LDMSCVSRKI GFFGDFMSHG GNFRLFAAAS PAVETSVKED KLPADLKVTE
101: TVQANSSVKL SVEVPEIVCE DCYQRVLTEF MKLSKVPGFR PKTRVPENII VGFVGRQYVL RATVESILKR TLPHAMESVT GRALKDSIQI VSSFPDMEKA
201: YSKLKTLSYE VVVDVVPELK WNPEDGYKNM KVVVELGDEI DAKKACERQL RQKYKSLGAL KIVTERGLQV GDLAVVDISA TTIDEDGSTG QAIPDAESKG
301: FHFDTEEGNR LLPGFLDAII GIRAGESKSF TLVFPESWKQ ESLRGQRAQF TVDCKELFYR DLPTLDDSLA DKLLPGCTTL KEVEETLAKR CQEMEQEAKE
401: QATDNAILEQ IRKMVEVEIP QSLFEEQGRQ FYGARLLEIQ GNMKLNEDQL ASLSSQKAVN EFLETQRESI TNIIKQNIAV GDIFKRENLE FSTDELVKEV
501: ENSISEFKKH KQEFDEERVK DQVQEILEGA KVLEWLKDRA EIQYITR

Arabidopsis Description

TIGTrigger factor-like protein TIG, Chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8S9L5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.