Factsheet for Zm00001d047056_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003470_P001
Zm00001d023606_P005
Zm00001d025574_P001
Zm00001d041839_P001
Zm00001d044874_P001
Zm00001d052194_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G55220.1	Zm00001d023606_P005	AT1G34430.1	21798944
AT5G55220.1	Zm00001d041839_P001	AT1G34430.1	21798944
AT5G55220.1	Zm00001d003470_P001	AT4G04020.1	21798944
AT5G55220.1	Zm00001d025574_P001	AT4G04020.1	21798944
AT5G55220.1	Zm00001d044874_P001	AT4G25200.1	21798944
AT5G55220.1	Zm00001d052194_P001	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d000318_P001	Maize	peroxisome	58.93	69.72
Zm00001d013704_P001	Maize	plastid	41.67	62.22
Zm00001d023292_P001	Maize	plastid	51.79	32.95
EES16569	Sorghum	plastid	47.32	30.29
TraesCS7B01G129300.1	Wheat	plastid	44.94	28.71
KRH14348	Soybean	endoplasmic reticulum, extracellular, plasma membrane	22.32	28.63
HORVU7Hr1G045680.1	Barley	plastid	44.64	28.52
TraesCS7D01G224400.1	Wheat	plastid	44.64	28.52
TraesCS7A01G222800.1	Wheat	plastid	44.64	28.52
Os06t0308000-01	Rice	plastid	44.64	27.93
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane	32.74	19.3
VIT_19s0090g01210.t01	Wine grape	plastid	29.76	18.66
Solyc07g064950.2.1	Tomato	nucleus, plastid	27.98	17.84
PGSC0003DMT400057431	Potato	plastid	28.87	17.77
KRH73811	Soybean	plastid	27.98	17.34
KRH14319	Soybean	plastid	27.38	16.88
AT5G55220.1	Thale cress	plastid	27.38	16.82
CDY06597	Canola	plastid	26.79	16.42
CDY20778	Canola	plastid	26.49	16.33
Bra035563.1-P	Field mustard	plastid	26.19	16.15
CDY19904	Canola	plastid	7.44	15.43
CDY17312	Canola	endoplasmic reticulum	11.9	10.44
CDY19903	Canola	extracellular	3.27	7.86
KRH26213	Soybean	cytosol, extracellular, nucleus, plastid	1.19	3.45
Bra002923.1-P	Field mustard	cytosol, nucleus, plastid	0.6	3.28

Protein Annotations

EnsemblPlants:Zm00001d047056_P001	EnsemblPlants:Zm00001d047056_T001	EnsemblPlantsGene:Zm00001d047056	Gene3D:3.30.70.1050	GO:GO:0006457	GO:GO:0006810
GO:GO:0008150	GO:GO:0009987	GO:GO:0015031	InterPro:IPR036611	InterPro:Trig_fac	InterPro:Trigger_fac_ribosome-bd_bac
InterPro:Trigger_fac_ribosome-bd_sf	PANTHER:PTHR30560	PANTHER:PTHR30560:SF3	PFAM:PF05697	ProteinID:AQL05504.1	SEG:seg
SUPFAM:SSF102735	UniParc:UPI0008444BBB	UniProt:A0A1D6P6M3	MapMan:18.12.3	:	:

Description

Trigger factor-like protein TIG Chloroplastic

Coordinates

chr9:-:116816846..116819190

Molecular Weight (calculated)

37153.7 Da

IEP (calculated)

9.741

GRAVY (calculated)

-0.184

Length

336 amino acids

Sequence
(BLAST)

001: MATNPSNGAG ADVPAAPVAV RLSVAAQAAA IQPSSPRFFF SSLAGTNPAS PHRRIAIAVD LSDAVSPRPR DGGCWFPVNS TAVELREATA GAETRSVSPR
101: RRSLDPVKFS VEVPTSIIHE CYQSTLQEYT KRVKVPGFRP GKTIPENVLI NYVGPQHVEE RALEDSVRIL TQFDDMRNSF SLDNVFRYDV AVDVALEVRW
201: LSEDKYKNLK VVVEIDEVVG AKKAAEKELQ RRHKALGLLR IVADRVILSL SRVVASRHKL STSCDSDLLC LTSSRNAQLH WPRAPMRLYR SSCRPCGGSA
301: AQPSGPPPLQ PHSFYSHIMF ICRYMLVRNL SLHMLL

Best Arabidopsis Sequence Match ( AT5G55220.1 )
(BLAST)

001: MELCVISTTT TVKAINPFLP SITRRVSSRL FQSDSVLQFG GRLKKPISRP LDMSCVSRKI GFFGDFMSHG GNFRLFAAAS PAVETSVKED KLPADLKVTE
101: TVQANSSVKL SVEVPEIVCE DCYQRVLTEF MKLSKVPGFR PKTRVPENII VGFVGRQYVL RATVESILKR TLPHAMESVT GRALKDSIQI VSSFPDMEKA
201: YSKLKTLSYE VVVDVVPELK WNPEDGYKNM KVVVELGDEI DAKKACERQL RQKYKSLGAL KIVTERGLQV GDLAVVDISA TTIDEDGSTG QAIPDAESKG
301: FHFDTEEGNR LLPGFLDAII GIRAGESKSF TLVFPESWKQ ESLRGQRAQF TVDCKELFYR DLPTLDDSLA DKLLPGCTTL KEVEETLAKR CQEMEQEAKE
401: QATDNAILEQ IRKMVEVEIP QSLFEEQGRQ FYGARLLEIQ GNMKLNEDQL ASLSSQKAVN EFLETQRESI TNIIKQNIAV GDIFKRENLE FSTDELVKEV
501: ENSISEFKKH KQEFDEERVK DQVQEILEGA KVLEWLKDRA EIQYITR

Arabidopsis Description

TIGTrigger factor-like protein TIG, Chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8S9L5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.