Factsheet for Bra002923.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, plastid

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000785.1-P
Bra013872.1-P
Bra028057.1-P
Bra029481.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G55220.1	Bra028057.1-P	AT1G34430.1	21798944
AT5G55220.1	Bra000785.1-P	AT4G04020.1	21798944
AT5G55220.1	Bra029481.1-P	AT4G04020.1	21798944
AT5G55220.1	Bra013872.1-P	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19903	Canola	extracellular	67.21	29.29
Bra035563.1-P	Field mustard	plastid	75.41	8.44
AT5G55220.1	Thale cress	plastid	72.13	8.04
Solyc07g064950.2.1	Tomato	nucleus, plastid	63.93	7.4
PGSC0003DMT400057431	Potato	plastid	63.93	7.14
VIT_19s0090g01210.t01	Wine grape	plastid	62.3	7.09
KRH73811	Soybean	plastid	59.02	6.64
KRH14319	Soybean	plastid	57.38	6.42
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane	59.02	6.32
Zm00001d023292_P001	Maize	plastid	52.46	6.06
Os06t0308000-01	Rice	plastid	52.46	5.96
TraesCS7A01G222800.1	Wheat	plastid	50.82	5.89
TraesCS7B01G129300.1	Wheat	plastid	50.82	5.89
TraesCS7D01G224400.1	Wheat	plastid	50.82	5.89
HORVU7Hr1G045680.1	Barley	plastid	50.82	5.89
EES16569	Sorghum	plastid	47.54	5.52
KRH26213	Soybean	cytosol, extracellular, nucleus, plastid	3.28	1.72
Zm00001d047056_P001	Maize	plastid	3.28	0.6
KRH14348	Soybean	endoplasmic reticulum, extracellular, plasma membrane	0.0	0.0
Zm00001d000318_P001	Maize	peroxisome	0.0	0.0
Zm00001d013704_P001	Maize	plastid	0.0	0.0

Protein Annotations

EnsemblPlants:Bra002923.1	EnsemblPlants:Bra002923.1-P	EnsemblPlantsGene:Bra002923	GO:GO:0006457	GO:GO:0006810	GO:GO:0008150
GO:GO:0009987	GO:GO:0015031	UniParc:UPI00025442A7	UniProt:M4CFE1	MapMan:18.12.3	:

Description

AT5G55220 (E=8e-019) | trigger factor type chaperone family protein

Coordinates

chrA10:+:6724227..6724503

Molecular Weight (calculated)

7168.3 Da

IEP (calculated)

5.076

GRAVY (calculated)

-0.933

Length

61 amino acids

Sequence
(BLAST)

1: MSGHYQHNKE NLAVGDIFKR ESLEFSTDEL VKEVDNSITE FRKHKQEYDG ERVKDQVLVL S

Best Arabidopsis Sequence Match ( AT5G55220.1 )
(BLAST)

001: MELCVISTTT TVKAINPFLP SITRRVSSRL FQSDSVLQFG GRLKKPISRP LDMSCVSRKI GFFGDFMSHG GNFRLFAAAS PAVETSVKED KLPADLKVTE
101: TVQANSSVKL SVEVPEIVCE DCYQRVLTEF MKLSKVPGFR PKTRVPENII VGFVGRQYVL RATVESILKR TLPHAMESVT GRALKDSIQI VSSFPDMEKA
201: YSKLKTLSYE VVVDVVPELK WNPEDGYKNM KVVVELGDEI DAKKACERQL RQKYKSLGAL KIVTERGLQV GDLAVVDISA TTIDEDGSTG QAIPDAESKG
301: FHFDTEEGNR LLPGFLDAII GIRAGESKSF TLVFPESWKQ ESLRGQRAQF TVDCKELFYR DLPTLDDSLA DKLLPGCTTL KEVEETLAKR CQEMEQEAKE
401: QATDNAILEQ IRKMVEVEIP QSLFEEQGRQ FYGARLLEIQ GNMKLNEDQL ASLSSQKAVN EFLETQRESI TNIIKQNIAV GDIFKRENLE FSTDELVKEV
501: ENSISEFKKH KQEFDEERVK DQVQEILEGA KVLEWLKDRA EIQYITR

Arabidopsis Description

TIGTrigger factor-like protein TIG, Chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8S9L5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.