Factsheet for Bra029481.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 10

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000785.1-P
Bra002437.1-P
Bra002438.1-P
Bra002766.1-P
Bra013602.1-P
Bra016572.1-P
Bra020223.1-P
Bra020224.1-P
Bra020883.1-P
Bra029481.1-P
Bra031013.1-P
Bra032084.1-P
Bra037622.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G04020.1	Bra016572.1-P	AT1G18040.1	21798944
AT4G04020.1	Bra031013.1-P	AT1G18040.1	21798944
AT4G04020.1	Bra032084.1-P	AT2G24570.1	21798944
AT4G04020.1	Bra000785.1-P	AT4G04020.1	21798944
AT4G04020.1	Bra029481.1-P	AT4G04020.1	21798944
AT4G04020.1	Bra020883.1-P	AT4G21070.1	16957774
AT4G04020.1	Bra037622.1-P	AT4G21070.1	16957774
AT4G04020.1	Bra013602.1-P	AT4G22240.1	24937144
AT4G04020.1	Bra002437.1-P	AT5G22890.1	21798944
AT4G04020.1	Bra002438.1-P	AT5G22890.1	21798944
AT4G04020.1	Bra020223.1-P	AT5G22890.1	21798944
AT4G04020.1	Bra020224.1-P	AT5G22890.1	21798944
AT4G04020.1	Bra002766.1-P	AT5G57050.1	16571665

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16684	Canola	plastid	96.86	96.86
CDX94540	Canola	plastid	44.65	95.3
CDY71809	Canola	plastid	53.77	90.96
AT4G04020.1	Thale cress	plastid	84.28	84.28
Bra000785.1-P	Field mustard	plastid	82.08	79.82
Bra013602.1-P	Field mustard	plastid	74.21	73.98
GSMUA_Achr7P05510_001	Banana	cytosol	54.4	69.48
KRH11500	Soybean	plastid	61.64	64.05
PGSC0003DMT400043112	Potato	extracellular	63.84	62.27
Solyc02g081170.2.1	Tomato	plastid	63.84	62.27
KRH36517	Soybean	plastid	61.01	62.18
GSMUA_Achr3P12980_001	Banana	plastid	57.23	56.88
TraesCS5B01G162100.1	Wheat	plastid	55.35	56.41
TraesCS5A01G164600.1	Wheat	plastid	55.66	56.37
Os09t0133600-01	Rice	plastid	56.29	56.11
Zm00001d003470_P001	Maize	plastid	53.77	53.77
Zm00001d025574_P001	Maize	extracellular	52.83	53.5
EES12270	Sorghum	plastid	54.72	52.73
GSMUA_Achr4P20110_001	Banana	plastid	50.0	50.96
HORVU0Hr1G012460.1	Barley	cytosol, mitochondrion, nucleus	53.46	45.58
Bra005337.1-P	Field mustard	plastid	40.57	35.83

Protein Annotations

EnsemblPlants:Bra029481.1	EnsemblPlants:Bra029481.1-P	EnsemblPlantsGene:Bra029481	InterPro:PAP/fibrillin_dom	ncoils:Coil	PANTHER:PTHR31906
PANTHER:PTHR31906:SF7	PFAM:PF04755	SEG:seg	UniParc:UPI0002542712	UniProt:M4EL14	MapMan:35.1

Description

AT4G04020 (E=7e-145) FIB | FIB (FIBRILLIN); structural molecule

Coordinates

chrA09:-:17695020..17696568

Molecular Weight (calculated)

34935.3 Da

IEP (calculated)

5.291

GRAVY (calculated)

-0.294

Length

318 amino acids

Sequence
(BLAST)

001: MATVPLFTQF PCKTIVPTSS NSKLQSKSPT LMFVNPINRR SEARTAVHRP EFKVRATDVN DEWGPDASER GSNVSVAEKE AEEAIESVEE TERLKRSLAD
101: SLYGTDRGLS ASSETRAEIS ELITQLESKN PNPAPNEALF LLSGKWILAY TSFVGLFPLL SRRISPLVKV DEISQTIDSD SFTVQNSVRF AGPLATTSFS
201: TNAKFEVQSP KRVQIKFEQG VIGTPQLTDS IEIPESVEVL GQKIDLNPIR GLLTSVQDTA SSVARTISNR PPLKFSLPAD RAQSWLLTTY LDKDLRISRG
301: DGGSIFVLFK EGSSLLNP

Best Arabidopsis Sequence Match ( AT4G04020.1 )
(BLAST)

001: MATVPLFTQF PCKTLNPSSS NTKHQSKSPI LLPINSINRR SEIGVSVHRP DFKIRATDID DEWGQDGVER VFASSSTVSV ADKAIESVEE TERLKRSLAD
101: SLYGTDRGLS VSSDTRAEIS ELITQLESKN PTPAPNEALF LLNGKWILAY TSFVGLFPLL SRRIEPLVKV DEISQTIDSD SFTVQNSVRF AGPFSTTSFS
201: TNAKFEIRSP KRVQIKFEQG VIGTPQLTDS IEIPESVEVL GQKIDLNPIK GLLTSVQDTA SSVARTISNQ PPLKFSLPSD NTQSWLLTTY LDKDLRISRG
301: DGGSVYVLIK EGSSLLNP

Arabidopsis Description

PAP1Probable plastid-lipid-associated protein 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O81439]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.