CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93170
KRH00715
KRH02667
KRH02746
KRH11144
KRH11500
KRH12454
KRH19120
KRH19237
KRH22822
KRH36517
KRH37441
KRH39114
KRH40471
KRH41782
KRH48165
KRH48600
KRH56510
KRH60482
KRH65066

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G04020.1	KRH39114	AT1G18040.1	21798944
AT4G04020.1	KRH41782	AT1G18040.1	21798944
AT4G04020.1	KRH48600	AT1G18040.1	21798944
AT4G04020.1	KRH60482	AT1G18040.1	21798944
AT4G04020.1	KRH02746	AT2G24570.1	21798944
AT4G04020.1	KRH19120	AT2G24570.1	21798944
AT4G04020.1	KRH11500	AT4G04020.1	21798944
AT4G04020.1	KRH36517	AT4G04020.1	21798944
AT4G04020.1	KRH11144	AT4G21070.1	16957774
AT4G04020.1	KRH11500	AT4G22240.1	24937144
AT4G04020.1	KRH36517	AT4G22240.1	24937144
AT4G04020.1	KRH22822	AT5G22890.1	21798944
AT4G04020.1	KRH02667	AT5G57050.1	16571665
AT4G04020.1	KRH12454	AT5G57050.1	16571665
AT4G04020.1	KRH19237	AT5G57050.1	16571665
AT4G04020.1	KRH37441	AT5G57050.1	16571665
AT4G22240.1	KRH00715	AT3G61310.1	21798944
AT4G22240.1	KRH40471	AT3G61310.1	21798944
AT4G22240.1	KRH48165	AT3G61310.1	21798944
AT4G22240.1	KRH65066	AT3G61310.1	21798944
AT4G22240.1	KRH11500	AT4G04020.1	24937144
AT4G22240.1	KRH36517	AT4G04020.1	24937144
AT4G22240.1	KRH11500	AT4G22240.1	24937144
AT4G22240.1	KRH36517	AT4G22240.1	24937144
AT4G22240.1	KRG93170	ATCG00810.1	24937144
AT4G22240.1	KRH56510	ATCG00810.1	24937144

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11500	Soybean	plastid	88.78	90.52
GSMUA_Achr7P05510_001	Banana	cytosol	58.97	73.9
CDY71809	Canola	plastid	42.63	70.74
Solyc02g081170.2.1	Tomato	plastid	66.03	63.19
PGSC0003DMT400043112	Potato	extracellular	66.03	63.19
CDX82925	Canola	plastid	63.14	62.15
CDX79139	Canola	plastid	63.46	62.07
GSMUA_Achr3P12980_001	Banana	plastid	63.46	61.88
Bra013602.1-P	Field mustard	plastid	63.14	61.76
CDY16684	Canola	plastid	62.5	61.32
Bra029481.1-P	Field mustard	plastid	62.18	61.01
AT4G22240.1	Thale cress	plastid	60.58	60.97
CDX90850	Canola	plastid	61.22	60.44
CDY21291	Canola	plastid	60.9	60.13
GSMUA_Achr4P20110_001	Banana	plastid	59.29	59.29
Os09t0133600-01	Rice	plastid	60.58	59.25
AT4G04020.1	Thale cress	plastid	60.26	59.12
Zm00001d025574_P001	Maize	extracellular	58.97	58.6
Zm00001d003470_P001	Maize	plastid	59.29	58.18
TraesCS5B01G162100.1	Wheat	plastid	58.01	58.01
EES12270	Sorghum	plastid	61.22	57.88
Bra000785.1-P	Field mustard	plastid	60.58	57.8
TraesCS5A01G164600.1	Wheat	plastid	57.69	57.32
HORVU0Hr1G012460.1	Barley	cytosol, mitochondrion, nucleus	58.97	49.33
CDX94540	Canola	plastid	20.19	42.28
KRH74371	Soybean	nucleus, plastid	41.99	35.41

Protein Annotations

EMBL:ACUP02005379	EnsemblPlants:KRH36517	EnsemblPlantsGene:GLYMA_09G008100	EntrezGene:100800029	InterPro:PAP/fibrillin_dom	PANTHER:PTHR31906
PANTHER:PTHR31906:SF7	PFAM:PF04755	ProteinID:KRH36517	ProteinID:KRH36517.1	SEG:seg	UniParc:UPI00023391A5
UniProt:I1KZW8	MapMan:35.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:627003..628755

Molecular Weight (calculated)

33661.2 Da

IEP (calculated)

4.956

GRAVY (calculated)

-0.173

Length

312 amino acids

Sequence
(BLAST)

001: MASLSHLNKL LCMPPLNSSP STSPPRSSVG VSTKSVGRPR MVADFARPVG RVRAVTSDDE WGPEKEEEAY GGGVAVEEKP TETETEKLKK ALVDSFYGTD
101: LGLKATSETR AEIVELITQL EAKNPNPAPT DALTLLNGKW ILAYTSFAGL FPLLSSGTLP LVKVEEISQT IDTLNFTVQN SVQFAGPLAT TSISTNAKFD
201: VRSPKRVQIK FEEGIIGTPQ LTDSLEIPEN VELLGQKIDL TPFKGILTSV QDTASSVVKT ISSRPPLKIP ISNSNAQSWL LTTYLDEELR ISRGDGGSVF
301: VLIKEGSSLL TR

Best Arabidopsis Sequence Match ( AT4G04020.1 )
(BLAST)

001: MATVPLFTQF PCKTLNPSSS NTKHQSKSPI LLPINSINRR SEIGVSVHRP DFKIRATDID DEWGQDGVER VFASSSTVSV ADKAIESVEE TERLKRSLAD
101: SLYGTDRGLS VSSDTRAEIS ELITQLESKN PTPAPNEALF LLNGKWILAY TSFVGLFPLL SRRIEPLVKV DEISQTIDSD SFTVQNSVRF AGPFSTTSFS
201: TNAKFEIRSP KRVQIKFEQG VIGTPQLTDS IEIPESVEVL GQKIDLNPIK GLLTSVQDTA SSVARTISNQ PPLKFSLPSD NTQSWLLTTY LDKDLRISRG
301: DGGSVYVLIK EGSSLLNP

Arabidopsis Description

PAP1Probable plastid-lipid-associated protein 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O81439]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.