Factsheet for PGSC0003DMT400043112

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 10
cytosol 1

Predictors

GFP

MS/MS

Papers

extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400000467
PGSC0003DMT400001105
PGSC0003DMT400013749
PGSC0003DMT400024632
PGSC0003DMT400032131
PGSC0003DMT400043112
PGSC0003DMT400046382
PGSC0003DMT400075531

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G04020.1	PGSC0003DMT400032131	AT1G18040.1	21798944
AT4G04020.1	PGSC0003DMT400024632	AT2G24570.1	21798944
AT4G04020.1	PGSC0003DMT400075531	AT2G24570.1	21798944
AT4G04020.1	PGSC0003DMT400043112	AT4G04020.1	21798944
AT4G04020.1	PGSC0003DMT400013749	AT4G21070.1	16957774
AT4G04020.1	PGSC0003DMT400043112	AT4G22240.1	24937144
AT4G04020.1	PGSC0003DMT400001105	AT5G22890.1	21798944
AT4G04020.1	PGSC0003DMT400046382	AT5G57050.1	16571665
AT4G22240.1	PGSC0003DMT400000467	AT3G61310.1	21798944
AT4G22240.1	PGSC0003DMT400043112	AT4G04020.1	24937144
AT4G22240.1	PGSC0003DMT400043112	AT4G22240.1	24937144

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g081170.2.1	Tomato	plastid	95.09	95.09
GSMUA_Achr7P05510_001	Banana	cytosol	57.36	75.1
CDY71809	Canola	plastid	41.41	71.81
KRH11500	Soybean	plastid	63.5	67.65
KRH36517	Soybean	plastid	63.19	66.03
CDX82925	Canola	plastid	63.5	65.3
CDY16684	Canola	plastid	62.88	64.47
CDX79139	Canola	plastid	62.88	64.26
Bra013602.1-P	Field mustard	plastid	62.58	63.95
Bra029481.1-P	Field mustard	plastid	62.27	63.84
CDX90850	Canola	plastid	61.66	63.61
CDY21291	Canola	plastid	61.66	63.61
AT4G22240.1	Thale cress	plastid	59.82	62.9
GSMUA_Achr3P12980_001	Banana	plastid	61.66	62.81
AT4G04020.1	Thale cress	plastid	60.74	62.26
Bra000785.1-P	Field mustard	plastid	61.35	61.16
Os09t0133600-01	Rice	plastid	58.9	60.19
Zm00001d003470_P001	Maize	plastid	57.67	59.12
TraesCS5B01G162100.1	Wheat	plastid	56.13	58.65
TraesCS5A01G164600.1	Wheat	plastid	55.83	57.96
EES12270	Sorghum	plastid	58.59	57.88
Zm00001d025574_P001	Maize	extracellular	55.52	57.64
GSMUA_Achr4P20110_001	Banana	plastid	53.07	55.45
CDX94540	Canola	plastid	22.39	48.99
PGSC0003DMT400008946	Potato	plastid	25.46	47.98
HORVU0Hr1G012460.1	Barley	cytosol, mitochondrion, nucleus	54.6	47.72
PGSC0003DMT400038350	Potato	cytosol	40.8	32.36
PGSC0003DMT400054304	Potato	plastid	39.57	30.35

Protein Annotations

MapMan:35.1	ProteinID:CAA75558	ProteinID:CAA75558.1	GO:GO:0003674	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006950	GO:GO:0008150	GO:GO:0009414	GO:GO:0009507
GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009628	GO:GO:0016020	UniProt:M1BE41
InterPro:PAP/fibrillin_dom	PFAM:PF04755	EnsemblPlantsGene:PGSC0003DMG400016727	PGSC:PGSC0003DMG400016727	EnsemblPlants:PGSC0003DMT400043112	PANTHER:PTHR31906
PANTHER:PTHR31906:SF7	UniParc:UPI0002950D22	EMBL:Y15269	SEG:seg	:	:

Description

Light-induced protein, chloroplastic [Source:PGSC_GENE;Acc:PGSC0003DMG400016727]

Coordinates

chr2:-:36844337..36846348

Molecular Weight (calculated)

35652.3 Da

IEP (calculated)

4.971

GRAVY (calculated)

-0.291

Length

326 amino acids

Sequence
(BLAST)

001: MASISSLNQI PCRTLQITSQ YSKPTSKIST LPISSTNFPS KTEQHRSISV KEFTNPKPKF TAQATNYDKE DEWGPEVEQI RPGGVAVVEE EPPKEPSEIE
101: LLKKQLADSL YGTNRGLSAS SETRAEIVEL ITQLESKNPN PAPTEALTLL NGKWILAYTS FSGLFPLLSK GNLPLVRVEE ISQTIDSESF TVQNSVVFAG
201: PLATTSISTN AKFEVRSPKR VQIKFEEGII GTPQLTDSIV LPENVEFLGQ KIDLSPFKGL ITSVQDTASS VAKSISSQPP IKFPITNNNA QSWLLTTYLD
301: DELRISRGDA GSVFVLIKEG SPLLKP

Best Arabidopsis Sequence Match ( AT4G04020.1 )
(BLAST)

001: MATVPLFTQF PCKTLNPSSS NTKHQSKSPI LLPINSINRR SEIGVSVHRP DFKIRATDID DEWGQDGVER VFASSSTVSV ADKAIESVEE TERLKRSLAD
101: SLYGTDRGLS VSSDTRAEIS ELITQLESKN PTPAPNEALF LLNGKWILAY TSFVGLFPLL SRRIEPLVKV DEISQTIDSD SFTVQNSVRF AGPFSTTSFS
201: TNAKFEIRSP KRVQIKFEQG VIGTPQLTDS IEIPESVEVL GQKIDLNPIK GLLTSVQDTA SSVARTISNQ PPLKFSLPSD NTQSWLLTTY LDKDLRISRG
301: DGGSVYVLIK EGSSLLNP

Arabidopsis Description

PAP1Probable plastid-lipid-associated protein 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O81439]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.