Factsheet for GSMUA_Achr3P12980_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P03070_001
GSMUA_Achr1P15330_001
GSMUA_Achr1P23560_001
GSMUA_Achr3P00510_001
GSMUA_Achr3P05670_001
GSMUA_Achr3P09020_001
GSMUA_Achr3P12980_001
GSMUA_Achr3P27880_001
GSMUA_Achr4P20110_001
GSMUA_Achr4P20600_001
GSMUA_Achr4P30000_001
GSMUA_Achr5P04870_001
GSMUA_Achr5P20630_001
GSMUA_Achr5P21910_001
GSMUA_Achr6P03810_001
GSMUA_Achr6P29980_001
GSMUA_Achr7P05510_001
GSMUA_Achr7P15930_001
GSMUA_Achr8P11400_001
GSMUA_Achr9P17590_001
GSMUA_Achr9P22950_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G04020.1	GSMUA_Achr3P09020_001	AT1G18040.1	21798944
AT4G04020.1	GSMUA_Achr9P17590_001	AT1G18040.1	21798944
AT4G04020.1	GSMUA_Achr10P...	AT2G24570.1	21798944
AT4G04020.1	GSMUA_Achr1P23560_001	AT2G24570.1	21798944
AT4G04020.1	GSMUA_Achr3P00510_001	AT2G24570.1	21798944
AT4G04020.1	GSMUA_Achr3P05670_001	AT2G24570.1	21798944
AT4G04020.1	GSMUA_Achr3P27880_001	AT2G24570.1	21798944
AT4G04020.1	GSMUA_Achr4P20600_001	AT2G24570.1	21798944
AT4G04020.1	GSMUA_Achr5P04870_001	AT2G24570.1	21798944
AT4G04020.1	GSMUA_Achr5P21910_001	AT2G24570.1	21798944
AT4G04020.1	GSMUA_Achr6P03810_001	AT2G24570.1	21798944
AT4G04020.1	GSMUA_Achr7P15930_001	AT2G24570.1	21798944
AT4G04020.1	GSMUA_Achr9P22950_001	AT2G24570.1	21798944
AT4G04020.1	GSMUA_Achr3P12980_001	AT4G04020.1	21798944
AT4G04020.1	GSMUA_Achr4P20110_001	AT4G04020.1	21798944
AT4G04020.1	GSMUA_Achr7P05510_001	AT4G04020.1	21798944
AT4G04020.1	GSMUA_Achr6P29980_001	AT4G21070.1	16957774
AT4G04020.1	GSMUA_Achr3P12980_001	AT4G22240.1	24937144
AT4G04020.1	GSMUA_Achr4P20110_001	AT4G22240.1	24937144
AT4G04020.1	GSMUA_Achr7P05510_001	AT4G22240.1	24937144
AT4G04020.1	GSMUA_Achr11P...	AT5G22890.1	21798944
AT4G04020.1	GSMUA_Achr1P15330_001	AT5G22890.1	21798944
AT4G22240.1	GSMUA_Achr11P...	AT3G61310.1	21798944
AT4G22240.1	GSMUA_Achr11P...	AT3G61310.1	21798944
AT4G22240.1	GSMUA_Achr1P03070_001	AT3G61310.1	21798944
AT4G22240.1	GSMUA_Achr4P30000_001	AT3G61310.1	21798944
AT4G22240.1	GSMUA_Achr5P20630_001	AT3G61310.1	21798944
AT4G22240.1	GSMUA_Achr8P11400_001	AT3G61310.1	21798944
AT4G22240.1	GSMUA_Achr3P12980_001	AT4G04020.1	24937144
AT4G22240.1	GSMUA_Achr4P20110_001	AT4G04020.1	24937144
AT4G22240.1	GSMUA_Achr7P05510_001	AT4G04020.1	24937144
AT4G22240.1	GSMUA_Achr3P12980_001	AT4G22240.1	24937144
AT4G22240.1	GSMUA_Achr4P20110_001	AT4G22240.1	24937144
AT4G22240.1	GSMUA_Achr7P05510_001	AT4G22240.1	24937144
AT4G22240.1	GSMUA_Achr11P...	ATCG00810.1	24937144

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P05510_001	Banana	cytosol	68.44	87.95
GSMUA_Achr4P20110_001	Banana	plastid	66.88	68.59
CDY71809	Canola	plastid	38.44	65.43
KRH11500	Soybean	plastid	61.56	64.38
Os09t0133600-01	Rice	plastid	63.44	63.64
KRH36517	Soybean	plastid	61.88	63.46
TraesCS5B01G162100.1	Wheat	plastid	61.25	62.82
TraesCS5A01G164600.1	Wheat	plastid	60.62	61.78
PGSC0003DMT400043112	Potato	extracellular	62.81	61.66
Solyc02g081170.2.1	Tomato	plastid	61.56	60.43
Zm00001d003470_P001	Maize	plastid	59.69	60.06
Zm00001d025574_P001	Maize	extracellular	58.12	59.24
EES12270	Sorghum	plastid	60.0	58.18
CDX82925	Canola	plastid	57.5	58.04
AT4G04020.1	Thale cress	plastid	57.5	57.86
Bra013602.1-P	Field mustard	plastid	57.5	57.68
CDY16684	Canola	plastid	57.19	57.55
CDX79139	Canola	plastid	57.19	57.37
CDX90850	Canola	plastid	56.56	57.28
Bra029481.1-P	Field mustard	plastid	56.88	57.23
AT4G22240.1	Thale cress	plastid	55.31	57.1
CDY21291	Canola	plastid	56.25	56.96
Bra000785.1-P	Field mustard	plastid	55.62	54.43
HORVU0Hr1G012460.1	Barley	cytosol, mitochondrion, nucleus	61.25	52.55
CDX94540	Canola	plastid	19.06	40.94
GSMUA_Achr6P01070_001	Banana	plastid	40.0	33.33
GSMUA_Achr2P09810_001	Banana	plastid	23.12	27.82

Protein Annotations

EnsemblPlants:GSMUA_Achr3P12980_001	EnsemblPlants:GSMUA_Achr3T12980_001	EnsemblPlantsGene:GSMUA_Achr3G12980_001	InterPro:PAP/fibrillin_dom	PANTHER:PTHR31906	PANTHER:PTHR31906:SF7
PFAM:PF04755	SEG:seg	UniParc:UPI000296D00C	UniProt:M0SE65	MapMan:35.1	:

Description

Plastid-lipid-associated protein, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr3G12980_001]

Coordinates

chr3:-:9560775..9563823

Molecular Weight (calculated)

34417.0 Da

IEP (calculated)

5.072

GRAVY (calculated)

-0.129

Length

320 amino acids

Sequence
(BLAST)

001: MASAASWNTF TLNAPPAAAV AAGPPHVRRS SLALTALRLR SPISRSSGRF LSYPAPIRTR AVVDDDEWGK EGNGEPESGV AVVEPPVEEL SEAGELKRKL
101: MDLLSGTDRG LKASSETRAE IVELITQLEA KNPTPAPTDA LPLLNGKWIL AYTSFSQLFP LLGSGRLPQL VKVDEICQTI DSESFTVQNS VKFAGPLATT
201: SVTTNAKFEV RSPKRVQIKF EEGIIGTPQL TDDIVVPDKV EFLGQNVDLS PFKGVISSIQ NAASSVVRTI SGQPPLKIPI NNTNAQSWLL TTYLDEELRI
301: SRSDGGSVFV LIKEGSPLLN

Best Arabidopsis Sequence Match ( AT4G04020.1 )
(BLAST)

001: MATVPLFTQF PCKTLNPSSS NTKHQSKSPI LLPINSINRR SEIGVSVHRP DFKIRATDID DEWGQDGVER VFASSSTVSV ADKAIESVEE TERLKRSLAD
101: SLYGTDRGLS VSSDTRAEIS ELITQLESKN PTPAPNEALF LLNGKWILAY TSFVGLFPLL SRRIEPLVKV DEISQTIDSD SFTVQNSVRF AGPFSTTSFS
201: TNAKFEIRSP KRVQIKFEQG VIGTPQLTDS IEIPESVEVL GQKIDLNPIK GLLTSVQDTA SSVARTISNQ PPLKFSLPSD NTQSWLLTTY LDKDLRISRG
301: DGGSVYVLIK EGSSLLNP

Arabidopsis Description

PAP1Probable plastid-lipid-associated protein 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O81439]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.