CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 21417358

msms PMID: 21417358 doi

DR Demartini, R Jain, G Agrawal, JJ Thelen

Department of Biochemistry and Interdisciplinary Plant Group, Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, Missouri 65211, United States.

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX74505
CDX76414
CDX79031
CDX79139
CDX81858
CDX82797
CDX82925
CDX83876
CDX90850
CDX94540
CDX96739
CDX98183
CDY09178
CDY09179
CDY16684
CDY20325
CDY21291
CDY21722
CDY26965
CDY26966
CDY31715
CDY38260
CDY45583
CDY54381
CDY57063
CDY69109
CDY71809

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G04020.1	CDX81858	AT1G18040.1	21798944
AT4G04020.1	CDX83876	AT1G18040.1	21798944
AT4G04020.1	CDX96739	AT1G18040.1	21798944
AT4G04020.1	CDY21722	AT1G18040.1	21798944
AT4G04020.1	CDY20325	AT2G24570.1	21798944
AT4G04020.1	CDY45583	AT2G24570.1	21798944
AT4G04020.1	CDX90850	AT4G04020.1	21798944
AT4G04020.1	CDX94540	AT4G04020.1	21798944
AT4G04020.1	CDY16684	AT4G04020.1	21798944
AT4G04020.1	CDY21291	AT4G04020.1	21798944
AT4G04020.1	CDY71809	AT4G04020.1	21798944
AT4G04020.1	CDX76414	AT4G21070.1	16957774
AT4G04020.1	CDX79031	AT4G21070.1	16957774
AT4G04020.1	CDX82797	AT4G21070.1	16957774
AT4G04020.1	CDY57063	AT4G21070.1	16957774
AT4G04020.1	CDX79139	AT4G22240.1	24937144
AT4G04020.1	CDX82925	AT4G22240.1	24937144
AT4G04020.1	CDX74505	AT5G22890.1	21798944
AT4G04020.1	CDX98183	AT5G22890.1	21798944
AT4G04020.1	CDY09178	AT5G22890.1	21798944
AT4G04020.1	CDY09179	AT5G22890.1	21798944
AT4G04020.1	CDY26965	AT5G22890.1	21798944
AT4G04020.1	CDY26966	AT5G22890.1	21798944
AT4G04020.1	CDY31715	AT5G22890.1	21798944
AT4G04020.1	CDY69109	AT5G22890.1	21798944
AT4G04020.1	CDY38260	AT5G57050.1	16571665
AT4G04020.1	CDY54381	AT5G57050.1	16571665

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21291	Canola	plastid	96.2	96.2
Bra000785.1-P	Field mustard	plastid	95.25	92.05
CDY71809	Canola	plastid	50.95	85.64
CDY16684	Canola	plastid	83.86	83.33
AT4G04020.1	Thale cress	plastid	81.01	80.5
CDX79139	Canola	plastid	71.84	71.16
CDX94540	Canola	plastid	33.54	71.14
CDX82925	Canola	plastid	71.2	70.98
GSMUA_Achr7P05510_001	Banana	cytosol	53.48	67.87
KRH11500	Soybean	plastid	61.08	63.07
PGSC0003DMT400043112	Potato	extracellular	63.61	61.66
KRH36517	Soybean	plastid	60.44	61.22
Solyc02g081170.2.1	Tomato	plastid	62.66	60.74
GSMUA_Achr3P12980_001	Banana	plastid	57.28	56.56
TraesCS5B01G162100.1	Wheat	plastid	55.38	56.09
TraesCS5A01G164600.1	Wheat	plastid	55.06	55.41
Os09t0133600-01	Rice	plastid	55.06	54.55
Zm00001d003470_P001	Maize	plastid	53.48	53.14
Zm00001d025574_P001	Maize	extracellular	52.22	52.55
EES12270	Sorghum	plastid	54.43	52.12
GSMUA_Achr4P20110_001	Banana	plastid	48.42	49.04
HORVU0Hr1G012460.1	Barley	cytosol, mitochondrion, nucleus	53.16	45.04
CDX84202	Canola	plastid	41.46	36.19
CDY31692	Canola	plastid	41.14	36.11

Protein Annotations

EnsemblPlants:CDX90850	EnsemblPlantsGene:GSBRNA2T00151565001	InterPro:PAP/fibrillin_dom	PANTHER:PTHR31906	PANTHER:PTHR31906:SF7	PFAM:PF04755
ProteinID:CDX90850	ProteinID:CDX90850.1	SEG:seg	UniParc:UPI0004EF4C03	MapMan:35.1	:

Description

BnaA03g25300D

Coordinates

chrLK031864:+:856400..858406

Molecular Weight (calculated)

34444.0 Da

IEP (calculated)

6.813

GRAVY (calculated)

-0.169

Length

316 amino acids

Sequence
(BLAST)

001: MATTVPLFSQ FTCKTPITSS STSSFQSKSP ILLPINPISR RLAVHRHDFK VRASDVNDEW GPDSKGRGGL NSSVAEKVAE EAIESAEETE RLKRVLAGSL
101: YGTDRGLSAS SETRAEISEL ITQLESKNPN PAPNEALFLL NGKWILVYTS FVGLFPLLSR RISPLVKVDE ISQTIDSDSF TVHNSVRFAG PLATTSLSTN
201: AKFEVRSPKR VQVKFEQGVI GTPQLTDSIE IPEFVEVLGQ KIDLNPIRGL LTSVQDTASS VARTISSQPP LKFSLPGEIA QSWLLTTYLD KDLRISRGDG
301: GSVFVLIREG SSLLNP

Best Arabidopsis Sequence Match ( AT4G04020.1 )
(BLAST)

001: MATVPLFTQF PCKTLNPSSS NTKHQSKSPI LLPINSINRR SEIGVSVHRP DFKIRATDID DEWGQDGVER VFASSSTVSV ADKAIESVEE TERLKRSLAD
101: SLYGTDRGLS VSSDTRAEIS ELITQLESKN PTPAPNEALF LLNGKWILAY TSFVGLFPLL SRRIEPLVKV DEISQTIDSD SFTVQNSVRF AGPFSTTSFS
201: TNAKFEIRSP KRVQIKFEQG VIGTPQLTDS IEIPESVEVL GQKIDLNPIK GLLTSVQDTA SSVARTISNQ PPLKFSLPSD NTQSWLLTTY LDKDLRISRG
301: DGGSVYVLIK EGSSLLNP

Arabidopsis Description

PAP1Probable plastid-lipid-associated protein 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O81439]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.