CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31692	Canola	plastid	92.27	92.78
AT2G35490.1	Thale cress	plastid	74.59	71.81
PGSC0003DMT400008946	Potato	plastid	31.49	65.9
Solyc08g076480.2.1	Tomato	plastid	50.83	53.49
VIT_02s0012g02050.t01	Wine grape	plastid	56.08	53.14
KRH74371	Soybean	nucleus, plastid	53.59	52.43
Zm00001d030074_P001	Maize	plastid	53.59	50.79
EER94440	Sorghum	plastid	53.04	50.39
Os10t0575700-00	Rice	plastid	51.1	49.47
TraesCS1D01G197400.1	Wheat	plastid	48.9	49.17
TraesCS1A01G193500.1	Wheat	plastid	48.9	49.17
TraesCS1B01G208500.1	Wheat	plastid	48.62	48.89
GSMUA_Achr6P01070_001	Banana	plastid	51.66	48.7
PGSC0003DMT400038350	Potato	cytosol	51.93	45.74
HORVU1Hr1G050640.1	Barley	cytosol	48.62	44.78
CDY71809	Canola	plastid	23.2	44.68
Solyc08g005220.2.1	Tomato	plastid	50.28	43.54
PGSC0003DMT400054304	Potato	plastid	50.28	42.82
CDY21291	Canola	plastid	36.19	41.46
CDX90850	Canola	plastid	36.19	41.46
CDY16684	Canola	plastid	36.19	41.2
CDX82925	Canola	plastid	34.25	39.12
CDX79139	Canola	plastid	33.7	38.24
GSMUA_Achr2P09810_001	Banana	plastid	24.59	33.46
CDX94540	Canola	plastid	13.26	32.21

Protein Annotations

EnsemblPlants:CDX84202	EnsemblPlantsGene:GSBRNA2T00141253001	InterPro:PAP/fibrillin_dom	ncoils:Coil	PANTHER:PTHR31906	PANTHER:PTHR31906:SF5
PFAM:PF04755	ProteinID:CDX84202	ProteinID:CDX84202.1	SEG:seg	UniParc:UPI0004EF3AF0	MapMan:35.1

Description

BnaC04g09640D

Coordinates

chrLK031836:+:734362..736153

Molecular Weight (calculated)

39291.7 Da

IEP (calculated)

4.272

GRAVY (calculated)

-0.411

Length

362 amino acids

Sequence
(BLAST)

001: MATLFTTTTS RPFSANPSKT FSPSLSLKPN ALSFSLTHHR PPRPLRFSKI RSSLPSESDS EPEGGYSITD EWGEQPAEPE SQPDNAASAV SDEWGEKSEP
101: VPEESVTRFA ESDPPTNEDE WEEREGGGGD EGVDKTLELK RCLADTVYGT ELGFRAGSEV RAEVLEIVNQ LEALNPTQAP VENPELLDGN WVLLYTAFSE
201: LLPLLAAGST PLLKVKSISQ SIDTKNLSID NSTTLSTPFA DFSFSATASF EVRTPSRIEV SFKEGTLKPP EIKSSVDLPE SVGVFGQEVN LSFLKQSLNP
301: LQDVAANISR AISGQPPLKL PFPGNRGSSW LLTTYLDKDL RISRGDGGLF VLAREGSSLL EL

Best Arabidopsis Sequence Match ( AT2G35490.1 )
(BLAST)

001: MATLFTVARP SSLLYVSSIN PSKTFSPSIS LKLNSLSFSF GYRPKPLRFS KIRSSLPSES ESESDLDASA VTDEWGEKPG DANEPDSQPD NVTVNVITDE
101: WGEKSGPELE ESGTRFMESD PPRNEDEWGG EIGGETEADA GNGSAVSDPT WELKRCLADS VYGTELGFKA GSEVRAEVLE LVNQLEALNP TPAPLENPEL
201: LDGNWVLLYT AFSELIPLLA AGSTPLLKVK SISQSIDTNN LIIDNSTTLS SPFADFSFSA TASFEVRSPS RIEVSFKEGT LKPPVIKSSV DLPESVGVFG
301: QQISLSLLKQ SLNPLQDVAA NISRALSGQP PLKLPFPGNR GSSWLLTTYL DKDLRISRGD GGLFVLAREG SSLLEL

Arabidopsis Description

PAP3Probable plastid-lipid-associated protein 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O82291]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.