Factsheet for HORVU1Hr1G050640.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G193500.1	Wheat	plastid	80.15	87.5
TraesCS1D01G197400.1	Wheat	plastid	79.64	86.94
TraesCS1B01G208500.1	Wheat	plastid	79.39	86.67
Os10t0575700-00	Rice	plastid	58.78	61.76
PGSC0003DMT400008946	Potato	plastid	26.46	60.12
EER94440	Sorghum	plastid	58.27	60.1
Zm00001d030074_P001	Maize	plastid	57.25	58.9
Solyc08g076480.2.1	Tomato	plastid	43.0	49.13
KRH74371	Soybean	nucleus, plastid	46.06	48.92
CDX84202	Canola	plastid	44.78	48.62
CDY31692	Canola	plastid	44.53	48.61
GSMUA_Achr6P01070_001	Banana	plastid	47.33	48.44
Bra005337.1-P	Field mustard	plastid	44.27	48.33
VIT_02s0012g02050.t01	Wine grape	plastid	46.31	47.64
AT2G35490.1	Thale cress	plastid	42.75	44.68
PGSC0003DMT400038350	Potato	cytosol	42.75	40.88
PGSC0003DMT400054304	Potato	plastid	43.26	40.0
Solyc08g005220.2.1	Tomato	plastid	41.98	39.47
HORVU0Hr1G012460.1	Barley	cytosol, mitochondrion, nucleus	31.55	33.24
GSMUA_Achr2P09810_001	Banana	plastid	18.83	27.82

Protein Annotations

EnsemblPlants:HORVU1Hr1G050640.1	EnsemblPlantsGene:HORVU1Hr1G050640	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0009507	GO:GO:0009534	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0010287
GO:GO:0016020	InterPro:PAP/fibrillin_dom	PANTHER:PTHR31906	PANTHER:PTHR31906:SF5	PFAM:PF04755	SEG:seg
UniParc:UPI000B47EA39	UniProt:A0A287FIJ0	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chrchr1H:+:375899671..375903804

Molecular Weight (calculated)

42088.3 Da

IEP (calculated)

4.495

GRAVY (calculated)

-0.359

Length

393 amino acids

Sequence
(BLAST)

001: PAHTSDQRPT EEEWNHSFIH SSMAPLFASC HASHASLLLL SPNPAAAARL RVGGLRVRRP RRLRLPVRTA AGGSPLDAEI PDPTVDDDEW GREPPASASG
101: NSRPGVTDEW GEPGVPEPEQ PSGADTPTND DEWGGETTPT PPKAKEPPLF FADKAEEDPV TKEDEGREEL KRCLVDTVYG SGLGLKASSE VRGEVVELVA
201: QLEAANPTSA PVQASELDGN WILLYTAYSE LLPILLAGAT PFARVDKISQ EIDSRSMTII NASTISTPFA SFSFSATASF EVQTPSRIEV QFKEGSFQPP
301: EISSSVNLPE QIAIFGQKIS LGPVKQLLEP LQRAFASIAG SISGQPPLKV PIPGDNKAKS WLLTTYLDKD LRISKGDGGG VFILAKEGSP LLD

Best Arabidopsis Sequence Match ( AT2G35490.1 )
(BLAST)

001: MATLFTVARP SSLLYVSSIN PSKTFSPSIS LKLNSLSFSF GYRPKPLRFS KIRSSLPSES ESESDLDASA VTDEWGEKPG DANEPDSQPD NVTVNVITDE
101: WGEKSGPELE ESGTRFMESD PPRNEDEWGG EIGGETEADA GNGSAVSDPT WELKRCLADS VYGTELGFKA GSEVRAEVLE LVNQLEALNP TPAPLENPEL
201: LDGNWVLLYT AFSELIPLLA AGSTPLLKVK SISQSIDTNN LIIDNSTTLS SPFADFSFSA TASFEVRSPS RIEVSFKEGT LKPPVIKSSV DLPESVGVFG
301: QQISLSLLKQ SLNPLQDVAA NISRALSGQP PLKLPFPGNR GSSWLLTTYL DKDLRISRGD GGLFVLAREG SSLLEL

Arabidopsis Description

PAP3Probable plastid-lipid-associated protein 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O82291]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.