Factsheet for Solyc08g076480.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400038350	Potato	cytosol	80.81	67.64
CDY31692	Canola	plastid	54.07	51.67
KRH74371	Soybean	nucleus, plastid	55.52	51.62
Bra005337.1-P	Field mustard	plastid	53.78	51.39
Solyc08g005220.2.1	Tomato	plastid	62.21	51.2
CDX84202	Canola	plastid	53.49	50.83
Os10t0575700-00	Rice	plastid	54.94	50.53
VIT_02s0012g02050.t01	Wine grape	plastid	55.81	50.26
AT2G35490.1	Thale cress	plastid	52.91	48.4
TraesCS1A01G193500.1	Wheat	plastid	48.84	46.67
TraesCS1B01G208500.1	Wheat	plastid	48.26	46.11
TraesCS1D01G197400.1	Wheat	plastid	48.26	46.11
EER94440	Sorghum	plastid	50.87	45.93
GSMUA_Achr6P01070_001	Banana	plastid	51.16	45.83
Zm00001d030074_P001	Maize	plastid	50.87	45.81
HORVU1Hr1G050640.1	Barley	cytosol	49.13	43.0
Solyc02g081170.2.1	Tomato	plastid	36.92	38.96
GSMUA_Achr2P09810_001	Banana	plastid	24.71	31.95

Protein Annotations

EnsemblPlants:Solyc08g076480.2.1	EnsemblPlantsGene:Solyc08g076480.2	InterPro:PAP/fibrillin_dom	PANTHER:PTHR31906	PANTHER:PTHR31906:SF5	PFAM:PF04755
SEG:seg	UniParc:UPI000276BEC4	UniProt:K4CN10	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr8:+:60487458..60490810

Molecular Weight (calculated)

37479.2 Da

IEP (calculated)

4.373

GRAVY (calculated)

-0.319

Length

344 amino acids

Sequence
(BLAST)

001: MSTLYNPLIF TIKNPKGSLK PHTSLPSSVP TFRLRKFQNF SVQSSISSSN EPEKPTSITP DNDKADDKMV EFVDEWGEKS EPEPGPVTKL ADSDPPEYDD
101: EWGNGSPGVD VSGEEDEKLL ELKRCLVDTV YGTDFGFRAS SEIRAEALEF VCQLEAANPS PAPTESPELL DGNWILVFTA FSELLPLLAV GNIPLLKVEK
201: ISQDVNTNSS TIENATTLSS PVATLSFSAT ATFEVRSPSR IQVEFKEGNF KPPEIKSNIN LPETVDLFGQ KISLSPVQQS LGPLENAVAG IARTISGQPP
301: LKIPIPGGRT KSWLLTTYLD KDMRISRGDG GLFVLVKEGS SLLY

Best Arabidopsis Sequence Match ( AT2G35490.1 )
(BLAST)

001: MATLFTVARP SSLLYVSSIN PSKTFSPSIS LKLNSLSFSF GYRPKPLRFS KIRSSLPSES ESESDLDASA VTDEWGEKPG DANEPDSQPD NVTVNVITDE
101: WGEKSGPELE ESGTRFMESD PPRNEDEWGG EIGGETEADA GNGSAVSDPT WELKRCLADS VYGTELGFKA GSEVRAEVLE LVNQLEALNP TPAPLENPEL
201: LDGNWVLLYT AFSELIPLLA AGSTPLLKVK SISQSIDTNN LIIDNSTTLS SPFADFSFSA TASFEVRSPS RIEVSFKEGT LKPPVIKSSV DLPESVGVFG
301: QQISLSLLKQ SLNPLQDVAA NISRALSGQP PLKLPFPGNR GSSWLLTTYL DKDLRISRGD GGLFVLAREG SSLLEL

Arabidopsis Description

PAP3Probable plastid-lipid-associated protein 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O82291]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.