Factsheet for Solyc08g005220.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400008946	Potato	plastid	37.8	91.33
PGSC0003DMT400054304	Potato	plastid	91.15	89.65
Solyc08g076480.2.1	Tomato	plastid	51.2	62.21
KRH74371	Soybean	nucleus, plastid	45.45	51.35
Bra005337.1-P	Field mustard	plastid	43.54	50.56
AT2G35490.1	Thale cress	plastid	45.45	50.53
CDY31692	Canola	plastid	43.3	50.28
CDX84202	Canola	plastid	43.54	50.28
Os10t0575700-00	Rice	plastid	43.78	48.93
VIT_02s0012g02050.t01	Wine grape	plastid	44.5	48.69
GSMUA_Achr6P01070_001	Banana	plastid	42.58	46.35
Zm00001d030074_P001	Maize	plastid	41.63	45.55
EER94440	Sorghum	plastid	41.39	45.41
TraesCS1A01G193500.1	Wheat	plastid	38.52	44.72
TraesCS1B01G208500.1	Wheat	plastid	38.28	44.44
TraesCS1D01G197400.1	Wheat	plastid	38.28	44.44
HORVU1Hr1G050640.1	Barley	cytosol	39.47	41.98
Solyc02g081170.2.1	Tomato	plastid	29.9	38.34
GSMUA_Achr2P09810_001	Banana	plastid	20.1	31.58

Protein Annotations

EnsemblPlants:Solyc08g005220.2.1	EnsemblPlantsGene:Solyc08g005220.2	InterPro:PAP/fibrillin_dom	PANTHER:PTHR31906	PANTHER:PTHR31906:SF5	PFAM:PF04755
SEG:seg	UniParc:UPI000276B697	UniProt:K4CI13	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr8:-:141108..143480

Molecular Weight (calculated)

46139.9 Da

IEP (calculated)

4.161

GRAVY (calculated)

-0.329

Length

418 amino acids

Sequence
(BLAST)

001: MSILPLHSLI FNVNTTVKSY CYTSFLPSSS ISSYRFRKLS EFSTHSSFDD SRELFVPKTK QNDDDSDDKP FSFVDEWGER SKPELRPTTK LSESDPPIDV
101: DEWGRAELGI NNFSGIEDEW GEKSFPELRP EKTVSDSDPP IDEDEWIGAK LTGNNFIDRV SNQGVSEPES TEEDGWDEAE VVGRINAGVE EDERVAEMKR
201: CLIDTVYGTD FGLRASSEVR AEALELVAKL EAANPTPTTV ELLDGNWILV FTAFSELLPL LAVGTIPLLK VEKISQTIST SSLTIENSTT LSSPVATSSF
301: SATAIFEVQS SSRIQVEIKE GTFKPPEIKS KIDLPENMDI FGQNISLSPL QQSLGPLENV VAGIARTISG LPPLKVPIPG ERTKSWLITT YVDSDLRISR
401: GDGGLFVLVK EESSLLDQ

Best Arabidopsis Sequence Match ( AT2G35490.1 )
(BLAST)

001: MATLFTVARP SSLLYVSSIN PSKTFSPSIS LKLNSLSFSF GYRPKPLRFS KIRSSLPSES ESESDLDASA VTDEWGEKPG DANEPDSQPD NVTVNVITDE
101: WGEKSGPELE ESGTRFMESD PPRNEDEWGG EIGGETEADA GNGSAVSDPT WELKRCLADS VYGTELGFKA GSEVRAEVLE LVNQLEALNP TPAPLENPEL
201: LDGNWVLLYT AFSELIPLLA AGSTPLLKVK SISQSIDTNN LIIDNSTTLS SPFADFSFSA TASFEVRSPS RIEVSFKEGT LKPPVIKSSV DLPESVGVFG
301: QQISLSLLKQ SLNPLQDVAA NISRALSGQP PLKLPFPGNR GSSWLLTTYL DKDLRISRGD GGLFVLAREG SSLLEL

Arabidopsis Description

PAP3Probable plastid-lipid-associated protein 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O82291]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.