Factsheet for TraesCS1B01G208500.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 16595579
plastid: 18419817
plastid: 22160430

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 18419817 doi

FM Dupont

Western Regional Research Center, United States Department of Agriculture, Agricultural Research Service, 800 Buchanan Street, Albany, CA 94710K, USA.

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G193500.1	Wheat	plastid	98.61	98.61
TraesCS1D01G197400.1	Wheat	plastid	97.78	97.78
HORVU1Hr1G050640.1	Barley	cytosol	86.67	79.39
Os10t0575700-00	Rice	plastid	63.89	61.5
EER94440	Sorghum	plastid	63.33	59.84
PGSC0003DMT400008946	Potato	plastid	28.61	59.54
Zm00001d030074_P001	Maize	plastid	62.78	59.16
KRH74371	Soybean	nucleus, plastid	50.28	48.92
CDX84202	Canola	plastid	48.89	48.62
CDY31692	Canola	plastid	48.61	48.61
Bra005337.1-P	Field mustard	plastid	48.33	48.33
Solyc08g076480.2.1	Tomato	plastid	46.11	48.26
VIT_02s0012g02050.t01	Wine grape	plastid	50.0	47.12
GSMUA_Achr6P01070_001	Banana	plastid	50.0	46.88
AT2G35490.1	Thale cress	plastid	46.39	44.41
PGSC0003DMT400038350	Potato	cytosol	45.28	39.66
PGSC0003DMT400054304	Potato	plastid	45.56	38.59
TraesCS5B01G162100.1	Wheat	plastid	33.33	38.46
Solyc08g005220.2.1	Tomato	plastid	44.44	38.28
GSMUA_Achr2P09810_001	Banana	plastid	21.94	29.7

Protein Annotations

EnsemblPlants:TraesCS1B01G208500.1	EnsemblPlantsGene:TraesCS1B01G208500	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0009507	GO:GO:0009534	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0010287
GO:GO:0016020	InterPro:PAP/fibrillin_dom	PANTHER:PTHR31906	PANTHER:PTHR31906:SF5	PFAM:PF04755	SEG:seg
SignalP:SignalP-noTM	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr1B:+:378397076..378399372

Molecular Weight (calculated)

38334.3 Da

IEP (calculated)

4.548

GRAVY (calculated)

-0.294

Length

360 amino acids

Sequence
(BLAST)

001: MAPLFASCHA SHASLLLLSP NPAAAARLRV GGLRVRRPRR LRLPVRTAAG GSPLDAEIPD PTVDDDEWGR EPPASAPGNS RPGVTDEWGE PGVAEPEQPS
101: GADTPTNDDE WGGEPTPTPP KAKEAPVTKE NEGREELKRC LVDTVYGSGL GLKTSSEVRG EVVELVAQLE ASNPTPAPVQ APELDGNWIL LYTAYSELLP
201: ILLAGATPFT RVDKISQEID SRSMTIINAS TISTPFASFS FSATASFEVQ TPSRIEVQFK EGSFQPPEIS SSVNLPEQIA IFGQKFSLGP VKELLEPLQR
301: AFASIAGSIS GQPPLKVPIP GDNKAKSWLL TTYLDKDLRI SKGDGGGVFI LAKEGSPLLD

Best Arabidopsis Sequence Match ( AT2G35490.1 )
(BLAST)

001: MATLFTVARP SSLLYVSSIN PSKTFSPSIS LKLNSLSFSF GYRPKPLRFS KIRSSLPSES ESESDLDASA VTDEWGEKPG DANEPDSQPD NVTVNVITDE
101: WGEKSGPELE ESGTRFMESD PPRNEDEWGG EIGGETEADA GNGSAVSDPT WELKRCLADS VYGTELGFKA GSEVRAEVLE LVNQLEALNP TPAPLENPEL
201: LDGNWVLLYT AFSELIPLLA AGSTPLLKVK SISQSIDTNN LIIDNSTTLS SPFADFSFSA TASFEVRSPS RIEVSFKEGT LKPPVIKSSV DLPESVGVFG
301: QQISLSLLKQ SLNPLQDVAA NISRALSGQP PLKLPFPGNR GSSWLLTTYL DKDLRISRGD GGLFVLAREG SSLLEL

Arabidopsis Description

PAP3Probable plastid-lipid-associated protein 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O82291]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.