Factsheet for VIT_02s0012g02050.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400008946	Potato	plastid	30.89	68.21
Bra005337.1-P	Field mustard	plastid	53.93	57.22
CDY31692	Canola	plastid	53.4	56.67
CDX84202	Canola	plastid	53.14	56.08
Solyc08g076480.2.1	Tomato	plastid	50.26	55.81
AT2G35490.1	Thale cress	plastid	53.93	54.79
KRH74371	Soybean	nucleus, plastid	51.83	53.51
GSMUA_Achr6P01070_001	Banana	plastid	52.88	52.6
Os10t0575700-00	Rice	plastid	50.0	51.07
TraesCS1A01G193500.1	Wheat	plastid	47.12	50.0
TraesCS1B01G208500.1	Wheat	plastid	47.12	50.0
Zm00001d030074_P001	Maize	plastid	49.74	49.74
TraesCS1D01G197400.1	Wheat	plastid	46.86	49.72
EER94440	Sorghum	plastid	49.21	49.34
HORVU1Hr1G050640.1	Barley	cytosol	47.64	46.31
PGSC0003DMT400038350	Potato	cytosol	49.21	45.74
Solyc08g005220.2.1	Tomato	plastid	48.69	44.5
PGSC0003DMT400054304	Potato	plastid	48.43	43.53
GSMUA_Achr2P09810_001	Banana	plastid	22.77	32.71

Protein Annotations

EntrezGene:100264252	wikigene:100264252	MapMan:35.1	ProteinID:CCB57862	ProteinID:CCB57862.1	UniProt:F6HT52
EMBL:FN596247	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0009507
GO:GO:0009534	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0010287	GO:GO:0016020
EntrezGene:LOC100264252	wikigene:LOC100264252	InterPro:PAP/fibrillin_dom	PFAM:PF04755	PANTHER:PTHR31906	PANTHER:PTHR31906:SF5
UniParc:UPI0001982BB7	ArrayExpress:VIT_02s0012g02050	EnsemblPlantsGene:VIT_02s0012g02050	EnsemblPlants:VIT_02s0012g02050.t01	unigene:Vvi.1728	RefSeq:XP_002276479
RefSeq:XP_002276479.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2:+:8757229..8762708

Molecular Weight (calculated)

40775.5 Da

IEP (calculated)

4.146

GRAVY (calculated)

-0.243

Length

382 amino acids

Sequence
(BLAST)

001: MAMLLTSHAS LFFKNPKTLR LSSIPTQSPS LSFAKVSTQN PLFSSIRLYA ASPDNPDSSS IKPPSASDGD ASDSEASDQD IQHDAAPAGV ADEWGEKAEP
101: ELEPEPEPED SYTKLSGADP PRDEDEWGGD GDAKDAYIKS GNGIATAAAA EVDEVGDLKR CLVDTVYGTN FGFEATAEVR AEVVELVNQL EAVNPTPAPT
201: EAAELLDGNW VLLYTAASEL LPLLAAGSTP LLKVKSICQS IETSSRTIVN STTLSSPFAT FSFSASATFE VRSPSRIQVQ FKEGTLQPPE IKSSLNLPEN
301: VDVFGQKINL SAVQQYLNPL QEAVASISRA ISGQPPLKVP IPGERSSSWL LITYLDKDIR ISRGDGGLFV LAREGSPLLD LY

Best Arabidopsis Sequence Match ( AT2G35490.1 )
(BLAST)

001: MATLFTVARP SSLLYVSSIN PSKTFSPSIS LKLNSLSFSF GYRPKPLRFS KIRSSLPSES ESESDLDASA VTDEWGEKPG DANEPDSQPD NVTVNVITDE
101: WGEKSGPELE ESGTRFMESD PPRNEDEWGG EIGGETEADA GNGSAVSDPT WELKRCLADS VYGTELGFKA GSEVRAEVLE LVNQLEALNP TPAPLENPEL
201: LDGNWVLLYT AFSELIPLLA AGSTPLLKVK SISQSIDTNN LIIDNSTTLS SPFADFSFSA TASFEVRSPS RIEVSFKEGT LKPPVIKSSV DLPESVGVFG
301: QQISLSLLKQ SLNPLQDVAA NISRALSGQP PLKLPFPGNR GSSWLLTTYL DKDLRISRGD GGLFVLAREG SSLLEL

Arabidopsis Description

PAP3Probable plastid-lipid-associated protein 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O82291]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.