CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 8

Predictors

GFP

MS/MS

Papers

plastid: 21417358

msms PMID: 21417358 doi

DR Demartini, R Jain, G Agrawal, JJ Thelen

Department of Biochemistry and Interdisciplinary Plant Group, Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, Missouri 65211, United States.

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX74505
CDX76414
CDX79031
CDX79139
CDX81858
CDX82797
CDX82925
CDX83876
CDX90850
CDX94540
CDX96739
CDX98183
CDY09178
CDY09179
CDY16684
CDY20325
CDY21291
CDY21722
CDY26965
CDY26966
CDY31715
CDY38260
CDY45583
CDY54381
CDY57063
CDY69109
CDY71809

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G04020.1	CDX81858	AT1G18040.1	21798944
AT4G04020.1	CDX83876	AT1G18040.1	21798944
AT4G04020.1	CDX96739	AT1G18040.1	21798944
AT4G04020.1	CDY21722	AT1G18040.1	21798944
AT4G04020.1	CDY20325	AT2G24570.1	21798944
AT4G04020.1	CDY45583	AT2G24570.1	21798944
AT4G04020.1	CDX90850	AT4G04020.1	21798944
AT4G04020.1	CDX94540	AT4G04020.1	21798944
AT4G04020.1	CDY16684	AT4G04020.1	21798944
AT4G04020.1	CDY21291	AT4G04020.1	21798944
AT4G04020.1	CDY71809	AT4G04020.1	21798944
AT4G04020.1	CDX76414	AT4G21070.1	16957774
AT4G04020.1	CDX79031	AT4G21070.1	16957774
AT4G04020.1	CDX82797	AT4G21070.1	16957774
AT4G04020.1	CDY57063	AT4G21070.1	16957774
AT4G04020.1	CDX79139	AT4G22240.1	24937144
AT4G04020.1	CDX82925	AT4G22240.1	24937144
AT4G04020.1	CDX74505	AT5G22890.1	21798944
AT4G04020.1	CDX98183	AT5G22890.1	21798944
AT4G04020.1	CDY09178	AT5G22890.1	21798944
AT4G04020.1	CDY09179	AT5G22890.1	21798944
AT4G04020.1	CDY26965	AT5G22890.1	21798944
AT4G04020.1	CDY26966	AT5G22890.1	21798944
AT4G04020.1	CDY31715	AT5G22890.1	21798944
AT4G04020.1	CDY69109	AT5G22890.1	21798944
AT4G04020.1	CDY38260	AT5G57050.1	16571665
AT4G04020.1	CDY54381	AT5G57050.1	16571665

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX94540	Canola	plastid	45.6	97.32
Bra029481.1-P	Field mustard	plastid	96.86	96.86
CDY71809	Canola	plastid	54.4	92.02
CDX90850	Canola	plastid	83.33	83.86
CDY21291	Canola	plastid	83.33	83.86
AT4G04020.1	Thale cress	plastid	83.65	83.65
CDX82925	Canola	plastid	74.21	74.45
CDX79139	Canola	plastid	73.9	73.67
GSMUA_Achr7P05510_001	Banana	cytosol	54.72	69.88
KRH11500	Soybean	plastid	61.64	64.05
Solyc02g081170.2.1	Tomato	plastid	64.47	62.88
PGSC0003DMT400043112	Potato	extracellular	64.47	62.88
KRH36517	Soybean	plastid	61.32	62.5
GSMUA_Achr3P12980_001	Banana	plastid	57.55	57.19
Os09t0133600-01	Rice	plastid	56.6	56.43
TraesCS5B01G162100.1	Wheat	plastid	55.35	56.41
TraesCS5A01G164600.1	Wheat	plastid	55.66	56.37
Zm00001d025574_P001	Maize	extracellular	53.14	53.82
Zm00001d003470_P001	Maize	plastid	53.46	53.46
EES12270	Sorghum	plastid	54.72	52.73
GSMUA_Achr4P20110_001	Banana	plastid	50.0	50.96
HORVU0Hr1G012460.1	Barley	cytosol, mitochondrion, nucleus	53.77	45.84
CDY31692	Canola	plastid	41.2	36.39
CDX84202	Canola	plastid	41.2	36.19

Protein Annotations

EnsemblPlants:CDY16684	EnsemblPlantsGene:GSBRNA2T00094536001	InterPro:PAP/fibrillin_dom	ncoils:Coil	PANTHER:PTHR31906	PANTHER:PTHR31906:SF7
PFAM:PF04755	ProteinID:CDY16684	ProteinID:CDY16684.1	SEG:seg	UniParc:UPI0004EDCD7B	UniProt:A0A078FUJ1
MapMan:35.1	:	:	:	:	:

Description

BnaA09g20620DBnaA09g20620D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FUJ1]

Coordinates

chrLK032066:-:541369..543221

Molecular Weight (calculated)

34846.2 Da

IEP (calculated)

5.105

GRAVY (calculated)

-0.280

Length

318 amino acids

Sequence
(BLAST)

001: MATVPLFTQF PCKTIVPTSS NSKLQSKSPT LVSVNPINRR TEVRTAVHRP DFKVRVSDVN DEWGPDSSER GSNVSVAEKE AEEAIESVEE TERLKRSLAD
101: SLYGTDRGLS ASSETRAEIS ELITQLESKN PNPAPNEALF LLSGKWILAY TSFVGLFPLL SRRISPLVKV DEISQTIDSD SFTVQNSVRF AGPLATTSFS
201: TNAKFEVQSP KRVQIKFEQG VIGTPQLTDS IEIPESVEVL GQKIDLNPIR GLLTSVQDTA SSVARTISSQ PPLKFSLPAD RAQSWLLTTY LDKDLRISRG
301: DGGSIFVLFK EGSSLLNP

Best Arabidopsis Sequence Match ( AT4G04020.1 )
(BLAST)

001: MATVPLFTQF PCKTLNPSSS NTKHQSKSPI LLPINSINRR SEIGVSVHRP DFKIRATDID DEWGQDGVER VFASSSTVSV ADKAIESVEE TERLKRSLAD
101: SLYGTDRGLS VSSDTRAEIS ELITQLESKN PTPAPNEALF LLNGKWILAY TSFVGLFPLL SRRIEPLVKV DEISQTIDSD SFTVQNSVRF AGPFSTTSFS
201: TNAKFEIRSP KRVQIKFEQG VIGTPQLTDS IEIPESVEVL GQKIDLNPIK GLLTSVQDTA SSVARTISNQ PPLKFSLPSD NTQSWLLTTY LDKDLRISRG
301: DGGSVYVLIK EGSSLLNP

Arabidopsis Description

PAP1Probable plastid-lipid-associated protein 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O81439]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.