Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G21070.1 | CDX90850 | AT4G04020.1 | 16957774 |
| AT4G21070.1 | CDX94540 | AT4G04020.1 | 16957774 |
| AT4G21070.1 | CDY16684 | AT4G04020.1 | 16957774 |
| AT4G21070.1 | CDY21291 | AT4G04020.1 | 16957774 |
| AT4G21070.1 | CDY71809 | AT4G04020.1 | 16957774 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX76414 | Canola | nucleus | 84.04 | 86.38 |
| CDX82797 | Canola | nucleus | 67.1 | 68.59 |
| CDX79031 | Canola | nucleus | 66.88 | 66.38 |
| AT4G21070.1 | Thale cress | nucleus | 62.43 | 61.11 |
| HORVU4Hr1G010810.1 | Barley | cytosol | 2.71 | 53.19 |
| Solyc08g023280.2.1 | Tomato | nucleus | 37.68 | 34.77 |
| PGSC0003DMT400013749 | Potato | nucleus | 37.78 | 32.92 |
| TraesCS1A01G329600.1 | Wheat | nucleus | 35.29 | 32.8 |
| HORVU1Hr1G077590.4 | Barley | plastid | 35.18 | 32.05 |
| TraesCS1D01G331700.1 | Wheat | nucleus | 33.44 | 32.02 |
| EES18483 | Sorghum | nucleus | 34.42 | 31.83 |
| Os05t0512000-01 | Rice | extracellular | 34.09 | 31.81 |
| TraesCS1B01G343100.2 | Wheat | nucleus | 34.53 | 31.77 |
| GSMUA_Achr6P29980_001 | Banana | nucleus | 33.22 | 31.22 |
| CDY10084 | Canola | vacuole | 23.45 | 30.99 |
| Zm00001d038667_P001 | Maize | nucleus | 30.73 | 30.79 |
| CDY68257 | Canola | mitochondrion, plastid | 6.19 | 24.46 |
| KRH11144 | Soybean | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 37.68 | 24.3 |
| CDY32524 | Canola | cytosol | 22.26 | 18.74 |
Protein Annotations
| KEGG:00220+6.3.2.- | KEGG:00261+6.3.2.- | KEGG:00380+6.3.2.- | MapMan:14.3.1.1 | Gene3D:3.30.40.10 | Gene3D:3.40.50.10190 |
| GO:A0A078J3K1 | UniProt:A0A078J3K1 | InterPro:BRCA1-associated | InterPro:BRCT_dom | InterPro:BRCT_dom_sf | EnsemblPlants:CDY57063 |
| ProteinID:CDY57063 | ProteinID:CDY57063.1 | InterPro:EPHD | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0006139 |
| GO:GO:0006259 | GO:GO:0006281 | GO:GO:0006950 | GO:GO:0006974 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0046872 | EnsemblPlantsGene:GSBRNA2T00020466001 | InterPro:IPR001357 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:IPR034732 | InterPro:IPR036420 | PFAM:PF00533 | PFAM:PF13771 | PFAM:PF13923 | PIRSF:PIRSF001734 |
| ScanProsite:PS00518 | PFscan:PS50089 | PFscan:PS50172 | PFscan:PS51805 | PANTHER:PTHR13763 | PANTHER:PTHR13763:SF1 |
| SMART:SM00184 | SMART:SM00292 | SUPFAM:SSF52113 | SUPFAM:SSF57850 | UniParc:UPI0004EF395E | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS | SEG:seg | : | : | : |
Description
BnaC03g64430DBnaC03g64430D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J3K1]
Coordinates
chrLK033544:-:15062..19286
Molecular Weight (calculated)
101777.0 Da
IEP (calculated)
9.354
GRAVY (calculated)
-0.719
Length
921 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDDGATHLE KMGRELKCPI CLSLFNSAVS LTCNHVFCNA CIVKSMKVDA TCPVCKVPFH RREIRGAPHM DSLVSIYKNM EVASGLHMFV SLTKQSSPEK
101: EMHVGDASIE KENGKKRVGS SKARTSKKRG SKRNKETDVD ATGPIVMKPS SQTNKRVQLS QNHSSQTLTK STESLESAEK LRDYTDKTVI RLNEHPSLNK
201: EDNLAPLFWL RDEDDGESLS APTESDQLLN VTPVDVPSFS DLKDSDHESP SKAVEQRPHP GDMFDSEMFE WTQRPCSPEI LPSPVKAKDL GRGEIDLPQR
301: ELSKDASSNK KRKAGSARKK VVNVRVGVSK EDHMASSAGE NIGERQVIGG TSGKSIRKDG KLDENVKAKR ATRNKGQTSE VQSGVKKSVE AEGKQGTKRK
401: RSSVKVSAEQ PVAVSNELSL GTENVGKGEQ EPEKQSPAEK PSLKKRRKSQ MRDLSERSEK KTSEKRSKLD SRATSSRVTQ SRGKKILSDE LNQEGDRQDS
501: TNKKKPNVDK CNHTVQDSEK RSTMNKPSLG GSVLLRRCSG PRTNKFPCAF CQSSDETEAS GKMSHYHKGD PVSADFSGGS NVIHVHKNCA EWAPNVYFNR
601: RTAVNLDVEL TRSRRITCSC CGLKGAALGC YNESCKNSFH VTCAKLIPEC RWDDKNFVML CPLDASSKLP CEEASPKGRK RKRAPEGPLQ AQANQVSEKS
701: DISELQRKPF HGLPKKMVLC CSGLTDEANS VILEFAELSG VTVSRKWEPR VTHVIASTNE NGACKRTLKF MMGILEGKWI LSIDWIKACM KNGEYVCEDP
801: YEISIDVHGT RQGPYIGRQR ALNKESKLFN GLKFYIMGDF ELAYKGMIVA AGGTILCRRP ISNDDNEVSA IIVFNVEPSK KKTLTERRSD AEALARSVNA
901: RAASSSWVLD SIAGCQVLEL I
101: EMHVGDASIE KENGKKRVGS SKARTSKKRG SKRNKETDVD ATGPIVMKPS SQTNKRVQLS QNHSSQTLTK STESLESAEK LRDYTDKTVI RLNEHPSLNK
201: EDNLAPLFWL RDEDDGESLS APTESDQLLN VTPVDVPSFS DLKDSDHESP SKAVEQRPHP GDMFDSEMFE WTQRPCSPEI LPSPVKAKDL GRGEIDLPQR
301: ELSKDASSNK KRKAGSARKK VVNVRVGVSK EDHMASSAGE NIGERQVIGG TSGKSIRKDG KLDENVKAKR ATRNKGQTSE VQSGVKKSVE AEGKQGTKRK
401: RSSVKVSAEQ PVAVSNELSL GTENVGKGEQ EPEKQSPAEK PSLKKRRKSQ MRDLSERSEK KTSEKRSKLD SRATSSRVTQ SRGKKILSDE LNQEGDRQDS
501: TNKKKPNVDK CNHTVQDSEK RSTMNKPSLG GSVLLRRCSG PRTNKFPCAF CQSSDETEAS GKMSHYHKGD PVSADFSGGS NVIHVHKNCA EWAPNVYFNR
601: RTAVNLDVEL TRSRRITCSC CGLKGAALGC YNESCKNSFH VTCAKLIPEC RWDDKNFVML CPLDASSKLP CEEASPKGRK RKRAPEGPLQ AQANQVSEKS
701: DISELQRKPF HGLPKKMVLC CSGLTDEANS VILEFAELSG VTVSRKWEPR VTHVIASTNE NGACKRTLKF MMGILEGKWI LSIDWIKACM KNGEYVCEDP
801: YEISIDVHGT RQGPYIGRQR ALNKESKLFN GLKFYIMGDF ELAYKGMIVA AGGTILCRRP ISNDDNEVSA IIVFNVEPSK KKTLTERRSD AEALARSVNA
901: RAASSSWVLD SIAGCQVLEL I
001: MADTSHLERM GRELKCPICL SLYNSAVSLS CNHVFCNACI VKSMKMDATC PVCKIPYHRR EIRGAPHMDS LVSIYKNMED ASGIKLFVSQ NNPSPSDKEK
101: QVRDASVEKA SDKNRQGSRK GRASKRNEYG KTKEIDVDAP GPIVMKPSSQ TKKRVQLLQN LSAESLTKPT ESVETAEKPK DYTENTVIRL DEHPSLNKEG
201: NLSPFFWLRD EDDGENSSQR TESDQLLGTT PVNVPSFSDL MDSDHESPSK EDEQQKPNPG DMFDSEMFEW TQRPCSPEIL PSPVKAKVLG RDEIDLTQKK
301: LPKVKVASSK CKNRKAGSAR NTVARRSIGV SQEDNMESSA AATISEQQDS RGTSGTIIRN DVNTDENVKA KRATRSKAQS TRVQSDLNVS NEADGKQGTK
401: RKRSSIKSSP AHPIAGPNEL SLGTEIVGKG DQDQAHGPSD THPEKRSPTE KPSLKKRGRK SNASSSLKDL SGKTQKKTSE KKLKLDSHMI SSKATQPHGN
501: GILTAGLNQG GDKQDSRNNR KSTVGKDDHT MQVIEKCSTI NKSSSGGSAH LRRCNGSLTK KFTCAFCQCS EDTEASGEMT HYYRGEPVSA DFNGGSKVIH
601: VHKNCAEWAP NVYFNDLTIV NLDVELTRSR RISCSCCGLK GAALGCYNKS CKNSFHVTCA KLIPECRWDN VKFVMLCPLD ASIKLPCEEA NSKDRKCKRT
701: PKEPLHSQPK QVSGKANIRE LHIKQFHGFS KKLVLSCSGL TVEEKTVIAE FAELSGVTIS KNWDSTVTHV IASINENGAC KRTLKFMMAI LEGKWILTID
801: WIKACMKNTK YVSEEPYEIT MDVHGIREGP YLGRQRALKK KPKLFTGLKF YIMGDFELAY KGYLQDLIVA AGGTILRRRP VSSDDNEAST IVVFSVEPSK
901: KKTLTQRRSD AEALAKSARA RAASSSWVLD SIAGCQILVL I
101: QVRDASVEKA SDKNRQGSRK GRASKRNEYG KTKEIDVDAP GPIVMKPSSQ TKKRVQLLQN LSAESLTKPT ESVETAEKPK DYTENTVIRL DEHPSLNKEG
201: NLSPFFWLRD EDDGENSSQR TESDQLLGTT PVNVPSFSDL MDSDHESPSK EDEQQKPNPG DMFDSEMFEW TQRPCSPEIL PSPVKAKVLG RDEIDLTQKK
301: LPKVKVASSK CKNRKAGSAR NTVARRSIGV SQEDNMESSA AATISEQQDS RGTSGTIIRN DVNTDENVKA KRATRSKAQS TRVQSDLNVS NEADGKQGTK
401: RKRSSIKSSP AHPIAGPNEL SLGTEIVGKG DQDQAHGPSD THPEKRSPTE KPSLKKRGRK SNASSSLKDL SGKTQKKTSE KKLKLDSHMI SSKATQPHGN
501: GILTAGLNQG GDKQDSRNNR KSTVGKDDHT MQVIEKCSTI NKSSSGGSAH LRRCNGSLTK KFTCAFCQCS EDTEASGEMT HYYRGEPVSA DFNGGSKVIH
601: VHKNCAEWAP NVYFNDLTIV NLDVELTRSR RISCSCCGLK GAALGCYNKS CKNSFHVTCA KLIPECRWDN VKFVMLCPLD ASIKLPCEEA NSKDRKCKRT
701: PKEPLHSQPK QVSGKANIRE LHIKQFHGFS KKLVLSCSGL TVEEKTVIAE FAELSGVTIS KNWDSTVTHV IASINENGAC KRTLKFMMAI LEGKWILTID
801: WIKACMKNTK YVSEEPYEIT MDVHGIREGP YLGRQRALKK KPKLFTGLKF YIMGDFELAY KGYLQDLIVA AGGTILRRRP VSSDDNEAST IVVFSVEPSK
901: KKTLTQRRSD AEALAKSARA RAASSSWVLD SIAGCQILVL I
Arabidopsis Description
BRCA1Protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q8RXD4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.