CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY10084	Canola	vacuole	54.39	85.37
AT1G04020.1	Thale cress	nucleus	37.75	57.92
Solyc09g066090.2.1	Tomato	nucleus	8.41	42.2
Solyc09g066080.1.1	Tomato	cytosol	9.05	40.57
Solyc05g016230.2.1	Tomato	nucleus	16.54	40.31
VIT_07s0005g03940.t01	Wine grape	plastid	15.36	40.1
CDY68257	Canola	mitochondrion, plastid	8.23	38.63
Solyc12g041980.1.1	Tomato	mitochondrion	8.5	37.8
KRG95712	Soybean	nucleus	23.31	37.78
KRH67433	Soybean	nucleus	23.31	37.61
Solyc06g008210.2.1	Tomato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	22.49	35.04
PGSC0003DMT400038153	Potato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	22.58	35.04
Solyc12g042000.1.1	Tomato	nucleus	6.58	34.78
GSMUA_Achr8P12560_001	Banana	nucleus	19.2	32.97
TraesCS2B01G401900.1	Wheat	nucleus, plasma membrane, vacuole	16.64	31.87
TraesCS2A01G384900.1	Wheat	nucleus	17.46	30.96
Os04t0512400-01	Rice	cytosol	17.73	30.84
EES12490	Sorghum	cytosol, nucleus, plasma membrane	17.37	30.5
Zm00001d003040_P001	Maize	extracellular, nucleus, vacuole	17.92	30.11
TraesCS2D01G381600.1	Wheat	cytosol, nucleus, plasma membrane	17.18	29.84
HORVU2Hr1G088840.1	Barley	nucleus	16.73	29.42
GSMUA_Achr8P13610_001	Banana	cytosol	13.16	26.33
HORVU2Hr1G088910.1	Barley	plastid	8.68	24.8
CDX76414	Canola	nucleus	19.2	23.44
OQU85242	Sorghum	nucleus	8.96	23.39
CDX82797	Canola	nucleus	18.56	22.53
TraesCS1B01G315000.1	Wheat	nucleus	10.24	22.36
CDY57063	Canola	nucleus	18.74	22.26
Zm00001d017078_P002	Maize	cytosol	10.69	22.16
CDX79031	Canola	nucleus	18.56	21.88
TraesCS1D01G304000.1	Wheat	nucleus	10.33	21.61
Os05t0486600-01	Rice	mitochondrion	10.88	21.33
TraesCS2D01G142000.2	Wheat	mitochondrion, plastid	11.24	18.75
TraesCS2A01G139100.2	Wheat	mitochondrion, plastid	11.06	18.39
HORVU0Hr1G002630.3	Barley	mitochondrion	11.06	18.06
TraesCS2B01G163200.1	Wheat	golgi, plasma membrane	10.88	17.92
KXG22233	Sorghum	nucleus	10.88	17.3
HORVU1Hr1G069020.11	Barley	plastid	10.69	16.74
TraesCS1D01G304600.1	Wheat	nucleus, plastid	11.06	15.76
TraesCS1B01G315300.1	Wheat	plastid	11.06	15.73
TraesCS1A01G304700.1	Wheat	nucleus	11.15	15.01

Protein Annotations

KEGG:00220+6.3.2.-	KEGG:00261+6.3.2.-	KEGG:00380+6.3.2.-	MapMan:14.3.1.1	Gene3D:3.30.40.10	Gene3D:3.40.50.10190
GO:A0A078H558	UniProt:A0A078H558	InterPro:BRCA1-associated	InterPro:BRCT_dom	InterPro:BRCT_dom_sf	EnsemblPlants:CDY32524
ProteinID:CDY32524	ProteinID:CDY32524.1	InterPro:EPHD	GO:GO:0003674	GO:GO:0005488	GO:GO:0006139
GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0006974	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00052510001	InterPro:IPR001357	InterPro:IPR001841	InterPro:IPR013083
InterPro:IPR034732	InterPro:IPR036420	PFAM:PF00533	PFAM:PF13771	PFAM:PF13923	ScanProsite:PS00518
PFscan:PS50089	PFscan:PS50172	PFscan:PS51805	PANTHER:PTHR13763	PANTHER:PTHR13763:SF1	SMART:SM00184
SMART:SM00249	SMART:SM00292	SUPFAM:SSF52113	SUPFAM:SSF57850	UniParc:UPI0004EF25FF	InterPro:Znf_PHD
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	SEG:seg	:	:

Description

BnaA09g50720DBnaA09g50720D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H558]

Coordinates

chrLK032295:+:374846..380121

Molecular Weight (calculated)

120993.0 Da

IEP (calculated)

7.115

GRAVY (calculated)

-0.702

Length

1094 amino acids

Sequence
(BLAST)

0001: MANFTNMLMN PWVLHLQKLD LELKCPLCLK LLNQPVLLPC DHIFCDSCIH ESSQVESGCP VCKSKHSKKA RRNLPFMESV ISIYKSLNAA VIVHLPQLQI
0101: RNTSNGGSED SEMIDKDVIK GNGGGSDSSS LDGSPLPASE SDNSGNHTPE SQKGPAAKCM SGITASEQFC NAARKRICVE SFSRDDSMLP KSKDSTPNPI
0201: TQDQTVNLLM ENVQSCDNGK AQIHQQLPES HTEQAAKRKC DITVSEAMEN HQKVYKRQKN LMQKADDIEL KNNYTSTSDD QLIGNTSKSS DLTPSVISDK
0301: PSSNITICGF CQSARVSEAS GEMLHYSRGN PVFGDDIFRS NVIHVHSACI EWAPQVYYEA DTVKNLKAEL ARGMKIKCTK CSLKGAALGC YVKSCRRSYH
0401: VPCAREMSRC RWDNEDFLLL CPAHSSVKFP SEKSRPRCCL PKADSLPEGK SAELCPLEDK PAMTKDLVLC GSALSQDDKR VMEKLAAKLN ATISRYWNPS
0501: VTHVIASTNE KGACTRTLKV LMGILNGKWI INADWMKASL EASQPVDEEQ YEIHIDTQGC QDGPKTARLR AASNKPKLFD GLKFYFHGDF FKGYKEDLQN
0601: LVKVAGESSN NVSDSDQRSS SAIVVYNIDP PPGCGLGEEG QRSLVTLGYW SPLLVINRRP YHAPPPPQFR CATAATHLYP IKYPPTKENS SPSPVMGCFP
0701: RCFGRRSNRR RQKRRESDQG KANNLSVEYA KPVHLSDRVS AVEEIIPKSS VIPITETCEE SPSPTRKRVT FDSKVKTHDH IALQESVEEL LQEEKQEVVP
0801: EVNPSKAGQS SSEKSEVASN PSGSHPSNYR YENCRESDDE VEEDELNCGE SDLDEEFYSD EAFSEDKLTK GVKIDAKLRR FNESVGDGNH NAQGVLNPVE
0901: NLTQWKAAKS NGKTIQKQSQ KENSNLISDQ QDKKDSFSFG CGDSQTDEAK KAGNKELTVD ASLSTWLSTS ETGSECNSVS NTPEKSKPAS YSKRVINSHD
1001: ERPVLCALTS EEIKQFSAAS TPRKSPRKSH DETPIIGTVG GYWGDHSKAV DSGGSVSSFK GIPNTTSKYR EDKSVNWHST PFEARLEKAL KRDK

Best Arabidopsis Sequence Match ( AT1G04020.1 )
(BLAST)

001: MAEFTNMLMN PWVLHLQKLE LELKCPLCLK LLNRPVLLPC DHVFCDSCVH KSSQVESGCP VCKSKHPKKA RRDLRFMESV ISIYKSLNAA VSVHLPQLQI
101: PNDCNYKNDA LNNSNSPKHG ESEDSEMTDK DVSKRSGGTD SSSRDGSPLP TSEESDPRPK HQDWTEKQLS DHLLLYEFES EYDAANHTPE SYTEQAAKNV
201: RDITASEQPS NAARKRICGD SFIQESSPNP KTQDPTLLRL MESLRSDDPT DYVKAQNHQL PKSHTEQDSK RKRDITASDA MENHLKVPKR ENNLMQKSAD
301: IDCNGKCSAN SDDQLSEKIS KALEQTSSNI TICGFCQSAR VSEATGEMLH YSRGRPVDGD DIFRSNVIHV HSACIEWAPQ VYYEGDTVKN LKAELARGMK
401: IKCTKCSLKG AALGCFVKSC RRSYHVPCAR EISRCRWDYE DFLLLCPAHS SVKFPNEKSG HRVSRAEPLP KINPAELCSL EQTPAFTKEL VLCGSALSKS
501: DKKLMESLAV RFNATISRYW NPSVTHVIAS TDEKGACTRT LKVLMGILNG KWIINAAWMK ASLKASQPVD EEPFEIQIDT QGCQDGPKTA RLRAETNKPK
601: LFEGLKFYFF GDFYKGYKED LQNLVKVAGG TILNTEDELG AESSNNVNDQ RSSSIVVYNI DPPHGCALGE EVTIIWQRAN DAEALASQTG SRLVGHTWVL
701: ESIAGYKLHP VIG

Arabidopsis Description

ATBARD1Breast cancer associated RING 1 [Source:UniProtKB/TrEMBL;Acc:A0A2H1ZEA6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.