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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:
  • nucleus 3
  • plasma membrane 1
  • mitochondrion 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus, plasma membrane
Any Predictor:cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:nucleus
MultiLoc:plasma membrane
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d003040_P001 Maize extracellular, nucleus, vacuole 89.25 85.41
Os04t0512400-01 Rice cytosol 74.0 73.29
TraesCS2A01G384900.1 Wheat nucleus 61.48 62.07
TraesCS2B01G401900.1 Wheat nucleus, plasma membrane, vacuole 56.34 61.47
HORVU2Hr1G088840.1 Barley nucleus 60.83 60.93
TraesCS2D01G381600.1 Wheat cytosol, nucleus, plasma membrane 60.67 60.0
HORVU2Hr1G088910.1 Barley plastid 30.18 49.09
GSMUA_Achr8P12560_001 Banana nucleus 44.62 43.64
VIT_07s0005g03940.t01 Wine grape plastid 27.93 41.53
Solyc09g066080.1.1 Tomato cytosol 15.89 40.57
Solyc05g016230.2.1 Tomato nucleus 27.93 38.75
Solyc12g041980.1.1 Tomato mitochondrion 15.09 38.21
Solyc09g066090.2.1 Tomato nucleus 13.16 37.61
Solyc12g042000.1.1 Tomato nucleus 11.88 35.75
KRG95712 Soybean nucleus 36.76 33.93
Solyc06g008210.2.1 Tomato endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole 38.2 33.9
KRH67433 Soybean nucleus 36.6 33.63
PGSC0003DMT400038153 Potato endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole 38.04 33.62
AT1G04020.1 Thale cress nucleus 34.67 30.29
CDY10084 Canola vacuole 33.23 29.7
OQU85242 Sorghum nucleus 19.74 29.36
CDY68257 Canola mitochondrion, plastid 9.79 26.18
KXG22233 Sorghum nucleus 24.56 22.24
EES18483 Sorghum nucleus 32.1 20.08
Bra032532.1-P Field mustard nucleus 33.39 18.42
CDY32524 Canola cytosol 30.5 17.37
Protein Annotations
MapMan:14.3.1.1Gene3D:3.30.40.10Gene3D:3.40.50.10190EntrezGene:8064471InterPro:BRCA1-associatedInterPro:BRCT_dom
InterPro:BRCT_dom_sfUniProt:C5YC03ncoils:CoilEnsemblPlants:EES12490ProteinID:EES12490ProteinID:EES12490.1
InterPro:EPHDGO:GO:0000724GO:GO:0003674GO:GO:0003824GO:GO:0004842GO:GO:0005488
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005886GO:GO:0006139
GO:GO:0006259GO:GO:0006281GO:GO:0006464GO:GO:0006629GO:GO:0006950GO:GO:0006974
GO:GO:0007049GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0016020
GO:GO:0016043GO:GO:0016567GO:GO:0016740GO:GO:0019538GO:GO:0031436GO:GO:0035066
GO:GO:0035067GO:GO:0042127GO:GO:0045717GO:GO:0045944GO:GO:0046872GO:GO:0070531
GO:GO:0071158InterPro:IPR001357InterPro:IPR001841InterPro:IPR013083InterPro:IPR034732InterPro:IPR036420
PFAM:PF00097PFAM:PF00533PFAM:PF13771PFscan:PS50089PFscan:PS50172PFscan:PS51805
PANTHER:PTHR13763PANTHER:PTHR13763:SF1SMART:SM00184SMART:SM00292EnsemblPlantsGene:SORBI_3006G144700SUPFAM:SSF52113
SUPFAM:SSF57850unigene:Sbi.20617UniParc:UPI0001A8775ARefSeq:XP_002448162.1InterPro:Znf_C3HC4_RING-typeInterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHDSEG:seg::::
Description
hypothetical protein
Coordinates
chr6:-:50648025..50652191
Molecular Weight (calculated)
67805.7 Da
IEP (calculated)
6.969
GRAVY (calculated)
-0.310
Length
623 amino acids
Sequence
(BLAST)
001: MENLRRLLNP LVLNLQKMEL ELTCPVCLKL LTSPTTLPCY HTSCSKCALT PTSKGYSCAI CKSGYCSQDL RPASHLESIV SIHRSLSSTV CTMIEQQDAQ
101: VNIPVAKTAS HGTPESGNRS GVMEKYDQMK SYNPVASKLV YDQSTGPAFG NMEGVQAKDP AVENNAGAAA VAPTAIVQKG HSGSQSSDGP GDLDCDSNDL
201: EGELITSRSL LQTALKRETN VMDDHTRELK RQKSNDQVQR QTTMASAWKC EFCHSSQVTE CTGPLSHYLN GEPIEADQAW KSSVHHVHEK CVEWAPQAFF
301: TGDIANNLEP ELARASKIKC SVCGLKGAAL GCLVKSCRNS FHVPCAYNIK GCKWDQENFV MLCSTHSSKK LPCERSKSKK KAKLQQPSSD TDGLNSPSPM
401: QRDELWTASP FLTSGWVICG SALIGHEKEI LDQFECHTGI TVTNTWSSDV THVIANTDER GACARTLKVL MAILAGKWVL NVNWLKDCIE ARKPIPEEPY
501: EISCDVHGSV NGPRSGRLRA MQQAPNLFAG LTFYFSGHFM PGYKANLEDL IAAGGGSILE KTQLSCASLI LYSMEPPQGN SPNTLETINK RIAEAQELAA
601: TVGCKAIPHT WLLDSIASCN LSV
Best Arabidopsis Sequence Match ( AT1G04020.2 )
(BLAST)
001: MAEFTNMLMN PWVLHLQKLE LELKCPLCLK LLNRPVLLPC DHVFCDSCVH KSSQVESGCP VCKSKHPKKG KRDLRFMESV ISIYKSLNAA VSVHLPQLQI
101: PNDCNYKNDA LNNSNSPKHG ESEDSEMTDK DVSKRSGGTD SSSRDGSPLP TSEESDPRPK HQDWTEKQLS DHLLLYEFES EYDAANHTPE SYTEQAAKNV
201: RDITASEQPS NAARKRICGD SFIQESSPNP KTQDPTLLRL MESLRSDDPT DYVKAQNHQL PKSHTEQDSK RKRDITASDA MENHLKVPKR ENNLMQKSAD
301: IDCNGKCSAN SDDQLSEKIS KALEQTSSNI TICGFCQSAR VSEATGEMLH YSRGRPVDGD DIFRSNVIHV HSACIEWAPQ VYYEGDTVKN LKAELARGMK
401: IKCTKCSLKG AALGCFVKSC RRSYHVPCAR EISRCRWDYE DFLLLCPAHS SVKFPNEKSG HRVSRAEPLP KINPAELCSL EQTPAFTKEL VLCGSALSKS
501: DKKLMESLAV RFNATISRYW NPSVTHVIAS TDEKGACTRT LKVLMGILNG KWIINAAWMK ASLKASQPVD EEPFEIQIDT QGCQDGPKTA RLRAETNKPK
601: LFEGLKFYFF GDFYKGYKED LQNLVKVAGG TILNTEDELG AESSNNVNDQ RSSSIVVYNI DPPHGCALGE EVTIIWQRAN DAEALASQTG SRLVGHTWVL
701: ESIAGYKLHP VIG
Arabidopsis Description
ATBARD1Breast cancer associated RING 1 [Source:UniProtKB/TrEMBL;Acc:A0A2H1ZEA6]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.