Factsheet for TraesCS2A01G384900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plasma membrane 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plasma membrane
MultiLoc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G401900.1	Wheat	nucleus, plasma membrane, vacuole	87.52	94.57
TraesCS2D01G381600.1	Wheat	cytosol, nucleus, plasma membrane	95.3	93.33
HORVU2Hr1G088840.1	Barley	nucleus	91.41	90.68
HORVU2Hr1G088910.1	Barley	plastid	44.57	71.8
Os04t0512400-01	Rice	cytosol	65.96	64.71
EES12490	Sorghum	cytosol, nucleus, plasma membrane	62.07	61.48
Zm00001d003040_P001	Maize	extracellular, nucleus, vacuole	62.72	59.45
VIT_07s0005g03940.t01	Wine grape	plastid	27.71	40.81
Solyc09g066080.1.1	Tomato	cytosol	16.05	40.57
GSMUA_Achr8P12560_001	Banana	nucleus	41.49	40.19
Solyc12g041980.1.1	Tomato	mitochondrion	15.72	39.43
Solyc05g016230.2.1	Tomato	nucleus	28.69	39.42
Solyc09g066090.2.1	Tomato	nucleus	12.8	36.24
KRG95712	Soybean	nucleus	36.3	33.19
KRH67433	Soybean	nucleus	35.98	32.74
Solyc12g042000.1.1	Tomato	nucleus	10.7	31.88
Solyc06g008210.2.1	Tomato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	35.66	31.34
PGSC0003DMT400038153	Potato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	35.66	31.21
AT1G04020.1	Thale cress	nucleus	34.36	29.73
CDY10084	Canola	vacuole	33.23	29.41
CDY68257	Canola	mitochondrion, plastid	9.72	25.75
TraesCS2A01G139100.2	Wheat	mitochondrion, plastid	21.56	20.21
TraesCS1A01G329600.1	Wheat	nucleus	30.79	19.17
Bra032532.1-P	Field mustard	nucleus	33.55	18.33
TraesCS1A01G304700.1	Wheat	nucleus	23.01	17.47
CDY32524	Canola	cytosol	30.96	17.46

Protein Annotations

MapMan:14.3.1.1	Gene3D:3.30.40.10	Gene3D:3.40.50.10190	InterPro:BRCA1-associated	InterPro:BRCT_dom	InterPro:BRCT_dom_sf
InterPro:EPHD	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0006974
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:IPR001357	InterPro:IPR001841	InterPro:IPR013083
InterPro:IPR034732	InterPro:IPR036420	PFAM:PF00533	PFAM:PF13771	PFscan:PS50089	PFscan:PS50172
PFscan:PS51805	PANTHER:PTHR13763	PANTHER:PTHR13763:SF1	SMART:SM00184	SMART:SM00292	SUPFAM:SSF52113
SUPFAM:SSF57850	EnsemblPlantsGene:TraesCS2A01G384900	EnsemblPlants:TraesCS2A01G384900.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	TIGR:cd00027
TIGR:cd16449	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2A:+:631519702..631523196

Molecular Weight (calculated)

66541.3 Da

IEP (calculated)

6.382

GRAVY (calculated)

-0.256

Length

617 amino acids

Sequence
(BLAST)

001: MEGMRRFVNP LKLSVQKMEL ELTCPVCLKL LSAPTMLPCC HTCCSKCATT QAMNGHSCAI CKLAYHPQDL RPASQIEALV NIQRSISSTV SSMSLQLGTQ
101: AAIPVAKATS QGTPESGTTS SYNLVAAKLP CSQASGPANE NVDGVQAMDP APGNRTNDVA AGPMVIVQTG PCGSQTPVGS GDLECDSNDL EGELITSGSP
201: PQSTLKRGPN VTDDSARGLK RQKSSDQSEK QPSMNAAWKC EFCHSSEISE CTGPLLHCLD EALVKDDQAW KSNVIHVHEK CAEWAPQAYF EGDMVKKLES
301: ELVRSSKMKC GICGLKGAAL GCLFKSCRKS YHLPCARGVS GCRWDEGEFV MLCPTHSSKR LPCERSKSKN KKAAQPQQPS SETVLGDSNS PFPMEMNELW
401: TSLCPTSEWV ICGSALSDQD KEILDQFEYH SGVTTTNNWS SNVTHVLANT NEDGACGRTR KVLLAILAGK WVVNVNWLSA CLEAKKPVPE EPYEIRSDVH
501: GAIDGPRIGR LRAMQKAPSL FSGLTFYFIG HPLTFKVELD ELIAAAGGSI LGKADLSSTS LIVYNKEVPK GCNEDAVDEV FSKREAEALD LATTFGCRVV
601: PHTWVLDSIA SCTLQPI

Best Arabidopsis Sequence Match ( AT1G04020.1 )
(BLAST)

001: MAEFTNMLMN PWVLHLQKLE LELKCPLCLK LLNRPVLLPC DHVFCDSCVH KSSQVESGCP VCKSKHPKKA RRDLRFMESV ISIYKSLNAA VSVHLPQLQI
101: PNDCNYKNDA LNNSNSPKHG ESEDSEMTDK DVSKRSGGTD SSSRDGSPLP TSEESDPRPK HQDWTEKQLS DHLLLYEFES EYDAANHTPE SYTEQAAKNV
201: RDITASEQPS NAARKRICGD SFIQESSPNP KTQDPTLLRL MESLRSDDPT DYVKAQNHQL PKSHTEQDSK RKRDITASDA MENHLKVPKR ENNLMQKSAD
301: IDCNGKCSAN SDDQLSEKIS KALEQTSSNI TICGFCQSAR VSEATGEMLH YSRGRPVDGD DIFRSNVIHV HSACIEWAPQ VYYEGDTVKN LKAELARGMK
401: IKCTKCSLKG AALGCFVKSC RRSYHVPCAR EISRCRWDYE DFLLLCPAHS SVKFPNEKSG HRVSRAEPLP KINPAELCSL EQTPAFTKEL VLCGSALSKS
501: DKKLMESLAV RFNATISRYW NPSVTHVIAS TDEKGACTRT LKVLMGILNG KWIINAAWMK ASLKASQPVD EEPFEIQIDT QGCQDGPKTA RLRAETNKPK
601: LFEGLKFYFF GDFYKGYKED LQNLVKVAGG TILNTEDELG AESSNNVNDQ RSSSIVVYNI DPPHGCALGE EVTIIWQRAN DAEALASQTG SRLVGHTWVL
701: ESIAGYKLHP VIG

Arabidopsis Description

ATBARD1Breast cancer associated RING 1 [Source:UniProtKB/TrEMBL;Acc:A0A2H1ZEA6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.