Factsheet for TraesCS2B01G401900.1

Subcellular Localization

min:

: max

Winner_takes_all: vacuole, plasma membrane, nucleus

Predictor Summary:

mitochondrion 1
plasma membrane 2
extracellular 1
endoplasmic reticulum 1
vacuole 2
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plasma membrane, vacuole
Any Predictor:	nucleus, plasma membrane, vacuole
iPSORT:	mitochondrion
MultiLoc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G384900.1	Wheat	nucleus	94.57	87.52
TraesCS2D01G381600.1	Wheat	cytosol, nucleus, plasma membrane	93.34	84.6
HORVU2Hr1G088840.1	Barley	nucleus	88.97	81.67
HORVU2Hr1G088910.1	Barley	plastid	47.11	70.23
Os04t0512400-01	Rice	cytosol	65.67	59.62
EES12490	Sorghum	cytosol, nucleus, plasma membrane	61.47	56.34
Zm00001d003040_P001	Maize	extracellular, nucleus, vacuole	62.17	54.53
VIT_07s0005g03940.t01	Wine grape	plastid	27.15	36.99
GSMUA_Achr8P12560_001	Banana	nucleus	40.28	36.11
Solyc05g016230.2.1	Tomato	nucleus	28.02	35.63
Solyc09g066090.2.1	Tomato	nucleus	13.49	35.32
Solyc09g066080.1.1	Tomato	cytosol	14.54	34.02
Solyc12g041980.1.1	Tomato	mitochondrion	14.01	32.52
Solyc12g042000.1.1	Tomato	nucleus	11.03	30.43
KRG95712	Soybean	nucleus	35.55	30.07
KRH67433	Soybean	nucleus	35.03	29.5
Solyc06g008210.2.1	Tomato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	33.8	27.49
PGSC0003DMT400038153	Potato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	33.8	27.38
CDY10084	Canola	vacuole	32.75	26.83
AT1G04020.1	Thale cress	nucleus	33.45	26.79
CDY68257	Canola	mitochondrion, plastid	10.51	25.75
TraesCS1B01G315000.1	Wheat	nucleus	21.54	24.55
TraesCS2B01G163200.1	Wheat	golgi, plasma membrane	20.67	17.77
TraesCS1B01G343100.2	Wheat	nucleus	30.65	17.48
TraesCS1B01G315300.1	Wheat	plastid	23.29	17.3
CDY32524	Canola	cytosol	31.87	16.64
Bra032532.1-P	Field mustard	nucleus	32.75	16.56

Protein Annotations

MapMan:14.3.1.1	Gene3D:3.30.40.10	Gene3D:3.40.50.10190	InterPro:BRCA1-associated	InterPro:BRCT_dom	InterPro:BRCT_dom_sf
InterPro:EPHD	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0006974
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:IPR001357	InterPro:IPR001841	InterPro:IPR013083
InterPro:IPR034732	InterPro:IPR036420	PFAM:PF00533	PFAM:PF13771	PFscan:PS50089	PFscan:PS50172
PFscan:PS51805	PANTHER:PTHR13763	PANTHER:PTHR13763:SF1	SMART:SM00184	SMART:SM00292	SUPFAM:SSF52113
SUPFAM:SSF57850	EnsemblPlantsGene:TraesCS2B01G401900	EnsemblPlants:TraesCS2B01G401900.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	TIGR:cd00027
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2B:+:570877088..570882056

Molecular Weight (calculated)

61607.1 Da

IEP (calculated)

6.117

GRAVY (calculated)

-0.318

Length

571 amino acids

Sequence
(BLAST)

001: MGLELTCPVC LKLLSAPTML PCCHTCCSKC ATPQAMNGHS CAICKLVYHP QDLRPASQIE ALVNIQRSIS STVSSMSLQL GTQADIHVAK ATSQGTPESG
101: TTSSYNLDAS KLPCNQASGP ANENADGVQA MDPAPGNRTN DVAVEPTVIV QTGPCGSQTP VGSGDLECDS NDLEGELITS GSPPQSTLKR GPNVTDDSTR
201: GLKRQKSSDQ SEKQPSMNAA WKCEFCHSSE ISECTGPLLH CLDEALVKDD QAWKSNVLHV HEKCAEWAPQ AYFEGDMVKK LESELARSSK MKCGICGLKG
301: AALGCLFKSC RKSYHLPCAR GVSGCRWDEG EFVMLCPTHS SKRLPCERSK SKNKKAAQPQ QPSSETVLGD SNSPFPMEMN ELWTSLCPTS EWVICGSALS
401: DQDKEILDQF EYHSGVTTTN NWSSNVTHVL ANTNEHGACG RTRKVLLAIL AGKWVVNVNW LSACLEAKKP VPEEPYEICS DVHGAIDGPR IGRLRAMQKA
501: PSLFSGLTFY FIGHPLTFKV ELDELIAAAG GSILGKADLS STSLIVYNKE VLNGCNEDAV DEVFSKRELR L

Best Arabidopsis Sequence Match ( AT1G04020.1 )
(BLAST)

001: MAEFTNMLMN PWVLHLQKLE LELKCPLCLK LLNRPVLLPC DHVFCDSCVH KSSQVESGCP VCKSKHPKKA RRDLRFMESV ISIYKSLNAA VSVHLPQLQI
101: PNDCNYKNDA LNNSNSPKHG ESEDSEMTDK DVSKRSGGTD SSSRDGSPLP TSEESDPRPK HQDWTEKQLS DHLLLYEFES EYDAANHTPE SYTEQAAKNV
201: RDITASEQPS NAARKRICGD SFIQESSPNP KTQDPTLLRL MESLRSDDPT DYVKAQNHQL PKSHTEQDSK RKRDITASDA MENHLKVPKR ENNLMQKSAD
301: IDCNGKCSAN SDDQLSEKIS KALEQTSSNI TICGFCQSAR VSEATGEMLH YSRGRPVDGD DIFRSNVIHV HSACIEWAPQ VYYEGDTVKN LKAELARGMK
401: IKCTKCSLKG AALGCFVKSC RRSYHVPCAR EISRCRWDYE DFLLLCPAHS SVKFPNEKSG HRVSRAEPLP KINPAELCSL EQTPAFTKEL VLCGSALSKS
501: DKKLMESLAV RFNATISRYW NPSVTHVIAS TDEKGACTRT LKVLMGILNG KWIINAAWMK ASLKASQPVD EEPFEIQIDT QGCQDGPKTA RLRAETNKPK
601: LFEGLKFYFF GDFYKGYKED LQNLVKVAGG TILNTEDELG AESSNNVNDQ RSSSIVVYNI DPPHGCALGE EVTIIWQRAN DAEALASQTG SRLVGHTWVL
701: ESIAGYKLHP VIG

Arabidopsis Description

ATBARD1Breast cancer associated RING 1 [Source:UniProtKB/TrEMBL;Acc:A0A2H1ZEA6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.