Factsheet for HORVU2Hr1G088840.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plasma membrane 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plasma membrane
MultiLoc:	plasma membrane
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G384900.1	Wheat	nucleus	90.68	91.41
TraesCS2B01G401900.1	Wheat	nucleus, plasma membrane, vacuole	81.67	88.97
TraesCS2D01G381600.1	Wheat	cytosol, nucleus, plasma membrane	89.55	88.41
HORVU2Hr1G088910.1	Barley	plastid	49.04	79.63
Os04t0512400-01	Rice	cytosol	64.79	64.07
EES12490	Sorghum	cytosol, nucleus, plasma membrane	60.93	60.83
Zm00001d003040_P001	Maize	extracellular, nucleus, vacuole	60.93	58.22
HORVU4Hr1G010810.1	Barley	cytosol	3.38	44.68
VIT_07s0005g03940.t01	Wine grape	plastid	27.49	40.81
Solyc09g066080.1.1	Tomato	cytosol	15.92	40.57
GSMUA_Achr8P12560_001	Banana	nucleus	41.0	40.03
Solyc12g041980.1.1	Tomato	mitochondrion	15.76	39.84
Solyc05g016230.2.1	Tomato	nucleus	28.46	39.42
Solyc09g066090.2.1	Tomato	nucleus	12.86	36.7
KRG95712	Soybean	nucleus	36.5	33.63
KRH67433	Soybean	nucleus	36.01	33.04
Solyc12g042000.1.1	Tomato	nucleus	10.93	32.85
Solyc06g008210.2.1	Tomato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	35.69	31.62
PGSC0003DMT400038153	Potato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	35.69	31.49
AT1G04020.1	Thale cress	nucleus	32.96	28.75
CDY10084	Canola	vacuole	31.83	28.41
CDY68257	Canola	mitochondrion, plastid	9.49	25.32
HORVU0Hr1G002630.3	Barley	mitochondrion	21.7	20.15
HORVU1Hr1G069020.11	Barley	plastid	20.9	18.6
HORVU1Hr1G077590.4	Barley	plastid	29.42	18.1
Bra032532.1-P	Field mustard	nucleus	31.99	17.63
CDY32524	Canola	cytosol	29.42	16.73

Protein Annotations

MapMan:14.3.1.1	Gene3D:3.30.40.10	Gene3D:3.40.50.10190	UniProt:A0A287IUW9	InterPro:BRCA1-associated	InterPro:BRCT_dom
InterPro:BRCT_dom_sf	InterPro:EPHD	GO:GO:0003674	GO:GO:0005488	GO:GO:0006139	GO:GO:0006259
GO:GO:0006281	GO:GO:0006950	GO:GO:0006974	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0046872	EnsemblPlantsGene:HORVU2Hr1G088840	EnsemblPlants:HORVU2Hr1G088840.1	InterPro:IPR001357	InterPro:IPR013083	InterPro:IPR034732
InterPro:IPR036420	PFAM:PF00533	PFAM:PF13771	PFscan:PS50172	PFscan:PS51805	PANTHER:PTHR13763
PANTHER:PTHR13763:SF1	SMART:SM00249	SMART:SM00292	SUPFAM:SSF52113	SUPFAM:SSF57850	UniParc:UPI000B46CF5E
InterPro:Znf_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrchr2H:+:635544970..635549297

Molecular Weight (calculated)

67486.2 Da

IEP (calculated)

6.394

GRAVY (calculated)

-0.307

Length

622 amino acids

Sequence
(BLAST)

001: MEGMRRFVNP LKLNVQKMEL ELTCPVCLKL LSAPTMLPCC HTCCSSKCAT TQAMNGHSCA ICKLAYHPQD LRPASQIEAL VNIQRSISST VSSMSLELGN
101: QAAIPVAKVA SQQTPESGTT SSYNLVTSLL PCNQSAGPAN ENVDGAQAMD PAPGNRTDDV KVEPTVIVQT GPCGSQTPNG SGDLECDSNY LEGELITSGS
201: PPQSTLKRGP NVTDDHTRGL KRQKSSDQSE KQPSMTGWKC EFCHTSEISQ CTGPFLHCLN EELVKDDQAW KSNVLHVHEK CAEWAPQAYF EGDMIKRLES
301: EVARSSKMKC GICGLKGAAL GCLVKSCRKS YHLPCARGVS DCRWDEGEFV MLCPSHSSKR LPCERSKSKN KKAAQPQQPS SDTTVLGDSN SPFPMEMNEL
401: WTSFCPASEW VICGSALSDQ DKEILNQFEY HSGVTTTNNW SSNVTHVLAN TTEHGACGRT RKVLLAILAG KWVVNVNWLN ACLEAKKPVP EEPYEISSDV
501: HGAIDGPRIG RLRAMQKAPS LFSGLAFYFI GQPLTFKVEL EELIAAAGGS ILGKADLSST SLIVYNKEIP KGCNEDAVDE VFSKREAEAL DLATTFGCRV
601: VPHTWVLDSI ASCTLQPTGH CI

Best Arabidopsis Sequence Match ( AT1G04020.1 )
(BLAST)

001: MAEFTNMLMN PWVLHLQKLE LELKCPLCLK LLNRPVLLPC DHVFCDSCVH KSSQVESGCP VCKSKHPKKA RRDLRFMESV ISIYKSLNAA VSVHLPQLQI
101: PNDCNYKNDA LNNSNSPKHG ESEDSEMTDK DVSKRSGGTD SSSRDGSPLP TSEESDPRPK HQDWTEKQLS DHLLLYEFES EYDAANHTPE SYTEQAAKNV
201: RDITASEQPS NAARKRICGD SFIQESSPNP KTQDPTLLRL MESLRSDDPT DYVKAQNHQL PKSHTEQDSK RKRDITASDA MENHLKVPKR ENNLMQKSAD
301: IDCNGKCSAN SDDQLSEKIS KALEQTSSNI TICGFCQSAR VSEATGEMLH YSRGRPVDGD DIFRSNVIHV HSACIEWAPQ VYYEGDTVKN LKAELARGMK
401: IKCTKCSLKG AALGCFVKSC RRSYHVPCAR EISRCRWDYE DFLLLCPAHS SVKFPNEKSG HRVSRAEPLP KINPAELCSL EQTPAFTKEL VLCGSALSKS
501: DKKLMESLAV RFNATISRYW NPSVTHVIAS TDEKGACTRT LKVLMGILNG KWIINAAWMK ASLKASQPVD EEPFEIQIDT QGCQDGPKTA RLRAETNKPK
601: LFEGLKFYFF GDFYKGYKED LQNLVKVAGG TILNTEDELG AESSNNVNDQ RSSSIVVYNI DPPHGCALGE EVTIIWQRAN DAEALASQTG SRLVGHTWVL
701: ESIAGYKLHP VIG

Arabidopsis Description

ATBARD1Breast cancer associated RING 1 [Source:UniProtKB/TrEMBL;Acc:A0A2H1ZEA6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.