Factsheet for HORVU0Hr1G002630.3

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus, plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
TargetP:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G142000.2	Wheat	mitochondrion, plastid	68.21	69.66
TraesCS2A01G139100.2	Wheat	mitochondrion, plastid	62.54	63.68
TraesCS2B01G163200.1	Wheat	golgi, plasma membrane	62.09	62.65
HORVU1Hr1G069020.11	Barley	plastid	53.28	51.07
OQU85242	Sorghum	nucleus	25.22	40.33
Os05t0486600-01	Rice	mitochondrion	32.69	39.25
Zm00001d017078_P002	Maize	cytosol	29.7	37.69
HORVU4Hr1G010810.1	Barley	cytosol	2.24	31.91
VIT_07s0005g03940.t01	Wine grape	plastid	18.96	30.31
KXG22233	Sorghum	nucleus	30.6	29.8
Solyc09g066090.2.1	Tomato	nucleus	9.25	28.44
GSMUA_Achr8P13610_001	Banana	cytosol	22.69	27.79
Solyc05g016230.2.1	Tomato	nucleus	17.61	26.28
Solyc12g042000.1.1	Tomato	nucleus	7.91	25.6
Solyc09g066080.1.1	Tomato	cytosol	9.1	25.0
Solyc12g041980.1.1	Tomato	mitochondrion	8.66	23.58
CDY68257	Canola	mitochondrion, plastid	8.06	23.18
HORVU2Hr1G088910.1	Barley	plastid	12.99	22.72
HORVU2Hr1G088840.1	Barley	nucleus	20.15	21.7
KRG95712	Soybean	nucleus	20.45	20.3
KRH67433	Soybean	nucleus	19.85	19.62
Solyc06g008210.2.1	Tomato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	20.3	19.37
PGSC0003DMT400038153	Potato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	20.3	19.29
CDY10084	Canola	vacuole	19.25	18.51
AT1G04020.1	Thale cress	nucleus	18.96	17.81
HORVU1Hr1G077590.4	Barley	plastid	19.1	12.66
Bra032532.1-P	Field mustard	nucleus	19.1	11.34
CDY32524	Canola	cytosol	18.06	11.06

Protein Annotations

MapMan:14.3.1.1	Gene3D:3.30.40.10	Gene3D:3.40.50.10190	UniProt:A0A287DUW1	InterPro:BRCA1-associated	InterPro:BRCT_dom
InterPro:BRCT_dom_sf	InterPro:EPHD	GO:GO:0003674	GO:GO:0005488	GO:GO:0006139	GO:GO:0006259
GO:GO:0006281	GO:GO:0006950	GO:GO:0006974	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0046872	EnsemblPlantsGene:HORVU0Hr1G002630	EnsemblPlants:HORVU0Hr1G002630.3	InterPro:IPR001357	InterPro:IPR013083	InterPro:IPR034732
InterPro:IPR036420	PFAM:PF00533	PFAM:PF13771	PFscan:PS50172	PFscan:PS51805	PANTHER:PTHR13763
PANTHER:PTHR13763:SF6	SMART:SM00249	SMART:SM00292	SUPFAM:SSF52113	UniParc:UPI000B47460F	InterPro:Znf_PHD
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrchrUn:-:11401869..11406729

Molecular Weight (calculated)

73341.8 Da

IEP (calculated)

7.000

GRAVY (calculated)

-0.467

Length

670 amino acids

Sequence
(BLAST)

001: GFGPAAARPA RAHSAGTTSA ARTGMLVDVK IQAGYADLES LRNAGNRNAS PAKGRKRKFG VDATKGESAG VNASNTGEHL RSCRKGKGQG KHARLVDKEG
101: ATGLGRVQTP TGVYEDECAF CHSFRTSEPL HGPMVLYHNG RIVSADDGHP TNAIYVHHKC MVWAPKVKSN GDTFENVEDE IKRGSGWDCS RCQLKGAALG
201: CYVRGCPNTY HAPCALLIPE CRWDEENRYV WCPKHAPPDE MSPPTNESAI LSPVLQNQSL AKEISADCQM EDNQIDALLG NEMSSPIIES SHSSNCPAKE
301: ISINRRMEDK QINPLLGNEM CSPIVESNIP TAVLQNHSSN RPAKEISADC QMEDKQFNPL ITSNSPLPGQ VHRQLAKEGI SALHRGQNLQ IDQPNTSSSS
401: LPQGQCSDKE GISTNYQREE KLVNQSSIPV DQWVLLGVAL SASEKDALKE FASLTSSILA EEWDKTVTHV IVGRDAGSAC GRSHEVLLAI LSGKWVLAAG
501: WVVDCLVKRI PGPKPCLAKL IPSPEISYEV KFFDGLRTSI DGPTKGRARA AEGARKLFSG LRFCLSAFMH PEDRKNIQNL IAAGEGQVLE GMSPDWLREN
601: LNRNPAEVYF IYDGGPPRKP TLDFDLEVQE TVEYVESGAQ VIRHQQLFDA ILSYDRRILE PISFFTKIRK

Best Arabidopsis Sequence Match ( AT1G04020.1 )
(BLAST)

001: MAEFTNMLMN PWVLHLQKLE LELKCPLCLK LLNRPVLLPC DHVFCDSCVH KSSQVESGCP VCKSKHPKKA RRDLRFMESV ISIYKSLNAA VSVHLPQLQI
101: PNDCNYKNDA LNNSNSPKHG ESEDSEMTDK DVSKRSGGTD SSSRDGSPLP TSEESDPRPK HQDWTEKQLS DHLLLYEFES EYDAANHTPE SYTEQAAKNV
201: RDITASEQPS NAARKRICGD SFIQESSPNP KTQDPTLLRL MESLRSDDPT DYVKAQNHQL PKSHTEQDSK RKRDITASDA MENHLKVPKR ENNLMQKSAD
301: IDCNGKCSAN SDDQLSEKIS KALEQTSSNI TICGFCQSAR VSEATGEMLH YSRGRPVDGD DIFRSNVIHV HSACIEWAPQ VYYEGDTVKN LKAELARGMK
401: IKCTKCSLKG AALGCFVKSC RRSYHVPCAR EISRCRWDYE DFLLLCPAHS SVKFPNEKSG HRVSRAEPLP KINPAELCSL EQTPAFTKEL VLCGSALSKS
501: DKKLMESLAV RFNATISRYW NPSVTHVIAS TDEKGACTRT LKVLMGILNG KWIINAAWMK ASLKASQPVD EEPFEIQIDT QGCQDGPKTA RLRAETNKPK
601: LFEGLKFYFF GDFYKGYKED LQNLVKVAGG TILNTEDELG AESSNNVNDQ RSSSIVVYNI DPPHGCALGE EVTIIWQRAN DAEALASQTG SRLVGHTWVL
701: ESIAGYKLHP VIG

Arabidopsis Description

ATBARD1Breast cancer associated RING 1 [Source:UniProtKB/TrEMBL;Acc:A0A2H1ZEA6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.