Factsheet for Bra032532.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY10084	Canola	vacuole	53.76	87.09
AT1G04020.1	Thale cress	nucleus	39.95	63.25
Bra037622.1-P	Field mustard	nucleus	2.39	49.09
Solyc09g066080.1.1	Tomato	cytosol	10.45	48.36
Solyc12g041980.1.1	Tomato	mitochondrion	9.92	45.53
Solyc05g016230.2.1	Tomato	nucleus	17.8	44.77
VIT_07s0005g03940.t01	Wine grape	plastid	16.21	43.68
Solyc09g066090.2.1	Tomato	nucleus	8.33	43.12
KRG95712	Soybean	nucleus	24.62	41.19
KRH67433	Soybean	nucleus	24.36	40.56
Solyc06g008210.2.1	Tomato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	23.47	37.75
PGSC0003DMT400038153	Potato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	23.47	37.59
Solyc12g042000.1.1	Tomato	nucleus	6.73	36.72
GSMUA_Achr8P12560_001	Banana	nucleus	20.19	35.79
Os04t0512400-01	Rice	cytosol	18.87	33.86
TraesCS2A01G384900.1	Wheat	nucleus	18.33	33.55
EES12490	Sorghum	cytosol, nucleus, plasma membrane	18.42	33.39
TraesCS2B01G401900.1	Wheat	nucleus, plasma membrane, vacuole	16.56	32.75
TraesCS2D01G381600.1	Wheat	cytosol, nucleus, plasma membrane	18.25	32.7
Zm00001d003040_P001	Maize	extracellular, nucleus, vacuole	18.78	32.57
HORVU2Hr1G088840.1	Barley	nucleus	17.63	31.99
GSMUA_Achr8P13610_001	Banana	cytosol	13.91	28.7
HORVU2Hr1G088910.1	Barley	plastid	8.59	25.33
OQU85242	Sorghum	nucleus	9.21	24.82
Bra020883.1-P	Field mustard	nucleus	19.49	24.5
TraesCS1B01G315000.1	Wheat	nucleus	10.81	24.35
TraesCS1D01G304000.1	Wheat	nucleus	10.81	23.33
Zm00001d017078_P002	Maize	cytosol	10.89	23.3
Os05t0486600-01	Rice	mitochondrion	11.43	23.12
TraesCS2D01G142000.2	Wheat	mitochondrion, plastid	11.34	19.51
TraesCS2A01G139100.2	Wheat	mitochondrion, plastid	11.16	19.15
HORVU0Hr1G002630.3	Barley	mitochondrion	11.34	19.1
TraesCS2B01G163200.1	Wheat	golgi, plasma membrane	10.98	18.67
KXG22233	Sorghum	nucleus	11.25	18.46
HORVU1Hr1G069020.11	Barley	plastid	11.25	18.17
TraesCS1D01G304600.1	Wheat	nucleus, plastid	11.6	17.06
TraesCS1B01G315300.1	Wheat	plastid	11.6	17.04
TraesCS1A01G304700.1	Wheat	nucleus	11.78	16.36

Protein Annotations

MapMan:14.3.1.1	Gene3D:3.30.40.10	Gene3D:3.40.50.10190	InterPro:BRCA1-associated	InterPro:BRCT_dom	InterPro:BRCT_dom_sf
EnsemblPlantsGene:Bra032532	EnsemblPlants:Bra032532.1	EnsemblPlants:Bra032532.1-P	InterPro:EPHD	GO:GO:0003674	GO:GO:0005488
GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0006974	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0046872	InterPro:IPR001357	InterPro:IPR001841	InterPro:IPR013083
InterPro:IPR034732	InterPro:IPR036420	UniProt:M4EUQ0	PFAM:PF00533	PFAM:PF13771	PFAM:PF13923
ScanProsite:PS00518	PFscan:PS50089	PFscan:PS50172	PFscan:PS51805	PANTHER:PTHR13763	PANTHER:PTHR13763:SF1
SMART:SM00184	SMART:SM00249	SMART:SM00292	SUPFAM:SSF52113	SUPFAM:SSF57850	UniParc:UPI0002543685
InterPro:Znf_PHD	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	SEG:seg	:

Description

AT1G04020 (E=3e-274) ATBARD1, BARD1 | BARD1 (BREAST CANCER ASSOCIATED RING 1); DNA binding / transcription coactivator

Coordinates

chrA09:-:36476326..36481650

Molecular Weight (calculated)

124764.0 Da

IEP (calculated)

6.332

GRAVY (calculated)

-0.699

Length

1129 amino acids

Sequence
(BLAST)

0001: MANFTNMLMN PWVLHLQKLD LELKCPLCLK LLNQPVLLPC DHIFCDSCIH ESSQVESGCP VCKSKHSKKA RRNLPFMESV ISIYKSLNAA VIVHLPQLQI
0101: RNTSNGGSED SEMIDKDVIK GNGGGSDSSS LDGSPLPASE SDNSGNHTPE SQKGPAAKCM SGITASEQFC NAARKRICVE SFSRDDSMLP KSKDSTPNPI
0201: TQDQTVNLLM ENLQSCDNGK AQIHQLPESH TEQAAKRKCD ITVSEAMENH QKVYKRQKNL MQKADDIELK NNYTSTSDDQ LIGNTSKSSD LTPSVILDQP
0301: SSNITICGFC QSARVSEATG EMLHYSRGNP VFGDDIFRSN VIHVHSACIE WAPQVYYEAD TVKNLNAELA RGMKIKCTKC SLKGAALGCY VKSCRRSYHV
0401: PCAREMSRCR WDNEDFLLLC PAHSSVKFPN EKSRPRRCLP EADPLPETKT DELCLVEDKP AMTKDLVLCG SALSQDDKRV MEKLAAKLNA TISRYWNPSV
0501: THVIASTNEK GACTRTLKVL MGILNGKWII NADWMKASLE ASQPVDEEQY EIHIDTQGCQ DGPKTARLRA ASNKPKLFDG LKFYFHGDFF KGYKEDLQNL
0601: VKVAGGTILK TEDELTAESS NNVSESDQRS SSTIVVYNID PPPGCGLGEE VTIIWQRANE AEALSSKTES KVVGHTWLLE SIAGYKSSSL PRSPPQFRCA
0701: TTATHLNPIK DLETPPPTKG NSSPSPVMGC FPRCFGRRSN RRRQKRRESE SDQGKANNLY VESAKADLLS DRISAVVEII PKSSVIPITE ICDEAEEKSS
0801: PSPNRKRVTF DSKVKTHDNV ALQDSAEELL QEEKQEVVPE VNPSKTVQSP EVASNPSGSH PSNYRYENCR ESDDEVEEDE LNCGESDLDE EFYSDEAFSE
0901: DKLTKGVKID AQLRRSAESV GDGNHYAQGV LNPVENLTQW KSAKSNGKTM QKQSQKENSN NLISDQPDKK DSFSFGGDSQ TDEPKKAGNK ELTVDASLST
1001: WLSTSETGSE CNSVSNTPEK NKPASYSKRV INSHDERPVL CALTSEEIKQ FSAASTPRKS PRKSHDETPI IGTVGGYWGD HSKAVDSGGS VSSFKGIPNT
1101: TSKYREDKSV NWHSTPFEAR LEKALKRDK

Best Arabidopsis Sequence Match ( AT1G04020.1 )
(BLAST)

001: MAEFTNMLMN PWVLHLQKLE LELKCPLCLK LLNRPVLLPC DHVFCDSCVH KSSQVESGCP VCKSKHPKKA RRDLRFMESV ISIYKSLNAA VSVHLPQLQI
101: PNDCNYKNDA LNNSNSPKHG ESEDSEMTDK DVSKRSGGTD SSSRDGSPLP TSEESDPRPK HQDWTEKQLS DHLLLYEFES EYDAANHTPE SYTEQAAKNV
201: RDITASEQPS NAARKRICGD SFIQESSPNP KTQDPTLLRL MESLRSDDPT DYVKAQNHQL PKSHTEQDSK RKRDITASDA MENHLKVPKR ENNLMQKSAD
301: IDCNGKCSAN SDDQLSEKIS KALEQTSSNI TICGFCQSAR VSEATGEMLH YSRGRPVDGD DIFRSNVIHV HSACIEWAPQ VYYEGDTVKN LKAELARGMK
401: IKCTKCSLKG AALGCFVKSC RRSYHVPCAR EISRCRWDYE DFLLLCPAHS SVKFPNEKSG HRVSRAEPLP KINPAELCSL EQTPAFTKEL VLCGSALSKS
501: DKKLMESLAV RFNATISRYW NPSVTHVIAS TDEKGACTRT LKVLMGILNG KWIINAAWMK ASLKASQPVD EEPFEIQIDT QGCQDGPKTA RLRAETNKPK
601: LFEGLKFYFF GDFYKGYKED LQNLVKVAGG TILNTEDELG AESSNNVNDQ RSSSIVVYNI DPPHGCALGE EVTIIWQRAN DAEALASQTG SRLVGHTWVL
701: ESIAGYKLHP VIG

Arabidopsis Description

ATBARD1Breast cancer associated RING 1 [Source:UniProtKB/TrEMBL;Acc:A0A2H1ZEA6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.