Factsheet for TraesCS1D01G304600.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plastid

Predictor Summary:

plastid 4
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G315300.1	Wheat	plastid	92.71	92.59
TraesCS1A01G304700.1	Wheat	nucleus	93.88	88.68
HORVU1Hr1G069020.11	Barley	plastid	66.02	72.53
TraesCS2D01G142000.2	Wheat	mitochondrion, plastid	50.52	59.15
TraesCS1D01G304000.1	Wheat	nucleus	38.8	56.98
OQU85242	Sorghum	nucleus	24.09	44.15
Os05t0486600-01	Rice	mitochondrion	30.86	42.47
Zm00001d017078_P002	Maize	cytosol	26.82	39.02
KXG22233	Sorghum	nucleus	28.26	31.54
VIT_07s0005g03940.t01	Wine grape	plastid	17.19	31.5
Solyc09g066090.2.1	Tomato	nucleus	8.72	30.73
Solyc05g016230.2.1	Tomato	nucleus	17.06	29.18
GSMUA_Achr8P13610_001	Banana	cytosol	20.18	28.34
Solyc12g042000.1.1	Tomato	nucleus	7.42	27.54
Solyc12g041980.1.1	Tomato	mitochondrion	8.72	27.24
Solyc09g066080.1.1	Tomato	cytosol	8.59	27.05
CDY68257	Canola	mitochondrion, plastid	7.42	24.46
TraesCS2D01G381600.1	Wheat	cytosol, nucleus, plasma membrane	17.84	21.75
KRG95712	Soybean	nucleus	19.01	21.63
KRH67433	Soybean	nucleus	18.49	20.94
Solyc06g008210.2.1	Tomato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	18.88	20.66
PGSC0003DMT400038153	Potato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	18.62	20.28
CDY10084	Canola	vacuole	17.06	18.79
AT1G04020.1	Thale cress	nucleus	17.19	18.51
TraesCS1D01G331700.1	Wheat	nucleus	17.84	14.24
Bra032532.1-P	Field mustard	nucleus	17.06	11.6
CDY32524	Canola	cytosol	15.76	11.06

Protein Annotations

MapMan:14.3.1.1	Gene3D:3.30.40.10	Gene3D:3.40.50.10190	InterPro:BRCA1-associated	InterPro:BRCT_dom	InterPro:BRCT_dom_sf
InterPro:EPHD	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0006974
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:IPR001357	InterPro:IPR013083	InterPro:IPR034732
InterPro:IPR036420	PFAM:PF00533	PFAM:PF13771	PFscan:PS50172	PFscan:PS51805	PANTHER:PTHR13763
PANTHER:PTHR13763:SF6	SMART:SM00249	SMART:SM00292	SUPFAM:SSF52113	EnsemblPlantsGene:TraesCS1D01G304600	EnsemblPlants:TraesCS1D01G304600.1
InterPro:Znf_PHD	InterPro:Znf_RING/FYVE/PHD	TIGR:cd00027	SEG:seg	:	:

Description

No Description!

Coordinates

chr1D:-:402125506..402130493

Molecular Weight (calculated)

83894.5 Da

IEP (calculated)

5.509

GRAVY (calculated)

-0.544

Length

768 amino acids

Sequence
(BLAST)

001: MGSGSGPVVW REIASSPPPG FGRPTEGVRG TASGSERPSP APGFGAARPS STQSGGTKSA ARTDMLLEAG MEAGSDNLEV QRHVGNESAS PAKGTKRKFV
101: VDATEGASPG VNASNTGQHQ HSRRKGKGPG KHAKLEDNKG ATRLGRDQTP IGVFEDECVF CHSFRTSEPF HGPMVLYHNR RIVPSDEGNP TNAIYVHEKC
201: MVWAPKVESN GDTFKNVESE INRSKRLRCR RCKLRGAALG CYDNSCRKSY HVPCAMMIPE CRWDPENRRV WCPKHAPPDE MSSPTMESDT LSPVLQNHSS
301: QCPAKEISVD CQMEDEHINP LPCDEMSSPI IESDITSAVL QSHSSQCPTK EISVDCQMEE EHINPLPGDE MSSPIIETDI TSAVLQNHSS QCPAKEISVD
401: CQMEDEHINP LPGDEMSSPI IETDITSAVL QNHSSQCPAK EISGDCQVEN EHINPLATSI SSLPGQVPGQ YLVKGGTSVL DRREDLQVDQ LNTSSSSLPQ
501: GQCLDRGRIS ANHRREEKLV NQSSTPVDQW VLLGISLSAS EKDSLKEFAS LTSSTLAEEW NKNVTHVIVG RNAGDACGRS YEVLMAILSG KWVVTAGWIV
601: DCLVEPIPDL KTCLEKPIPG PEISYEVNFC DGSCTSGYGP TKGRATAAEQ APKLFSGLHF CLSTYIDPED RETIRRLVAA GEGQVLEGIS PDRLHENLNR
701: NPAEVYFIYD SGPPRKITSD FDLILAKEIQ ESIEYAKSGA QVISHRRLLH AILCYNARIL DRRPHQDM

Best Arabidopsis Sequence Match ( AT1G04020.2 )
(BLAST)

001: MAEFTNMLMN PWVLHLQKLE LELKCPLCLK LLNRPVLLPC DHVFCDSCVH KSSQVESGCP VCKSKHPKKG KRDLRFMESV ISIYKSLNAA VSVHLPQLQI
101: PNDCNYKNDA LNNSNSPKHG ESEDSEMTDK DVSKRSGGTD SSSRDGSPLP TSEESDPRPK HQDWTEKQLS DHLLLYEFES EYDAANHTPE SYTEQAAKNV
201: RDITASEQPS NAARKRICGD SFIQESSPNP KTQDPTLLRL MESLRSDDPT DYVKAQNHQL PKSHTEQDSK RKRDITASDA MENHLKVPKR ENNLMQKSAD
301: IDCNGKCSAN SDDQLSEKIS KALEQTSSNI TICGFCQSAR VSEATGEMLH YSRGRPVDGD DIFRSNVIHV HSACIEWAPQ VYYEGDTVKN LKAELARGMK
401: IKCTKCSLKG AALGCFVKSC RRSYHVPCAR EISRCRWDYE DFLLLCPAHS SVKFPNEKSG HRVSRAEPLP KINPAELCSL EQTPAFTKEL VLCGSALSKS
501: DKKLMESLAV RFNATISRYW NPSVTHVIAS TDEKGACTRT LKVLMGILNG KWIINAAWMK ASLKASQPVD EEPFEIQIDT QGCQDGPKTA RLRAETNKPK
601: LFEGLKFYFF GDFYKGYKED LQNLVKVAGG TILNTEDELG AESSNNVNDQ RSSSIVVYNI DPPHGCALGE EVTIIWQRAN DAEALASQTG SRLVGHTWVL
701: ESIAGYKLHP VIG

Arabidopsis Description

ATBARD1Breast cancer associated RING 1 [Source:UniProtKB/TrEMBL;Acc:A0A2H1ZEA6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.