CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 5
plasma membrane 4
golgi 4
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G04020.1	Thale cress	nucleus	64.56	63.11
CDY32524	Canola	cytosol	85.37	54.39
Bra032532.1-P	Field mustard	nucleus	87.09	53.76
Solyc09g066080.1.1	Tomato	cytosol	16.21	46.31
Solyc05g016230.2.1	Tomato	nucleus	28.41	44.1
Solyc12g041980.1.1	Tomato	mitochondrion	15.49	43.9
VIT_07s0005g03940.t01	Wine grape	plastid	26.26	43.68
Solyc09g066090.2.1	Tomato	nucleus	13.63	43.58
KRG95712	Soybean	nucleus	39.02	40.3
KRH67433	Soybean	nucleus	39.02	40.12
Solyc12g042000.1.1	Tomato	nucleus	11.33	38.16
CDY68257	Canola	mitochondrion, plastid	12.63	37.77
Solyc06g008210.2.1	Tomato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	37.45	37.18
PGSC0003DMT400038153	Potato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	37.45	37.02
GSMUA_Achr8P12560_001	Banana	nucleus	32.14	35.16
Os04t0512400-01	Rice	cytosol	30.56	33.86
EES12490	Sorghum	cytosol, nucleus, plasma membrane	29.7	33.23
TraesCS2A01G384900.1	Wheat	nucleus	29.41	33.23
TraesCS2B01G401900.1	Wheat	nucleus, plasma membrane, vacuole	26.83	32.75
TraesCS2D01G381600.1	Wheat	cytosol, nucleus, plasma membrane	29.12	32.22
Zm00001d003040_P001	Maize	extracellular, nucleus, vacuole	29.99	32.1
HORVU2Hr1G088840.1	Barley	nucleus	28.41	31.83
GSMUA_Achr8P13610_001	Banana	cytosol	22.09	28.15
OQU85242	Sorghum	nucleus	15.64	26.01
HORVU2Hr1G088910.1	Barley	plastid	14.06	25.59
CDX76414	Canola	nucleus	31.85	24.78
TraesCS1B01G315000.1	Wheat	nucleus	17.5	24.35
Zm00001d017078_P002	Maize	cytosol	18.36	24.24
CDX82797	Canola	nucleus	31.28	24.2
TraesCS1D01G304000.1	Wheat	nucleus	17.65	23.52
CDY57063	Canola	nucleus	30.99	23.45
CDX79031	Canola	nucleus	31.13	23.38
Os05t0486600-01	Rice	mitochondrion	18.36	22.94
TraesCS2D01G142000.2	Wheat	mitochondrion, plastid	18.22	19.36
HORVU0Hr1G002630.3	Barley	mitochondrion	18.51	19.25
TraesCS2A01G139100.2	Wheat	mitochondrion, plastid	18.08	19.15
KXG22233	Sorghum	nucleus	18.65	18.9
TraesCS2B01G163200.1	Wheat	golgi, plasma membrane	17.79	18.67
HORVU1Hr1G069020.11	Barley	plastid	18.36	18.31
TraesCS1D01G304600.1	Wheat	nucleus, plastid	18.79	17.06
TraesCS1B01G315300.1	Wheat	plastid	18.79	17.04
TraesCS1A01G304700.1	Wheat	nucleus	19.08	16.36

Protein Annotations

KEGG:00220+6.3.2.-	KEGG:00261+6.3.2.-	KEGG:00380+6.3.2.-	MapMan:14.3.1.1	Gene3D:3.30.40.10	Gene3D:3.40.50.10190
GO:A0A078FAM7	UniProt:A0A078FAM7	InterPro:BRCA1-associated	InterPro:BRCT_dom	InterPro:BRCT_dom_sf	EnsemblPlants:CDY10084
ProteinID:CDY10084	ProteinID:CDY10084.1	InterPro:EPHD	GO:GO:0003674	GO:GO:0005488	GO:GO:0006139
GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0006974	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00031884001	InterPro:IPR001357	InterPro:IPR001841	InterPro:IPR013083
InterPro:IPR034732	InterPro:IPR036420	PFAM:PF00533	PFAM:PF13771	PFAM:PF13923	ScanProsite:PS00518
PFscan:PS50089	PFscan:PS50172	PFscan:PS51805	PANTHER:PTHR13763	PANTHER:PTHR13763:SF1	SMART:SM00184
SMART:SM00292	SUPFAM:SSF52113	SUPFAM:SSF57850	UniParc:UPI0004EF40A0	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_RING_CS	SEG:seg	:	:	:	:

Description

BnaC08g43670DBnaC08g43670D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FAM7]

Coordinates

chrLK032000:-:869945..873452

Molecular Weight (calculated)

76937.4 Da

IEP (calculated)

7.214

GRAVY (calculated)

-0.491

Length

697 amino acids

Sequence
(BLAST)

001: MAYFTNMLMN PWVLHLQKLG LELKCPLCLK LLNQPALLPC DHVFCESCIH ESSQVESGCP VCKSKHPKKA RRNLHFMESV ISIYESLNAA VGVHLPQLQI
101: RNGSNRPQDG GSEDSEMIDK DVIKGNGGGS DSSSLDGSPL PASESDNSGN HTPGSQKGPA AKCMSGVTAS EQFCNAARKR ICVESFSRDD SMLPKSKDTT
201: PNPITQDQTA HLLMENLQSC DNGKAQIHQQ VPESHTEQAA KRKCDITVSE AMENHQKVYK RQKNLMQKAD DFELKNNYTS NSDDQLIGNT SKSTDLTPSV
301: ISDQPSSNIT ICGFCQSARV SEATGEMLHY SRGNPVFGDD IFRSNVIHVH SACIEWAPQV YYEGDIVKNL KAELARGMKI KCTKCCLKGA ALGCYVKSCR
401: RSYHVPCARE MSRCRWDNED FLLLCPAHSS VKFPSEKSRP RRCLPKADSL PEGKSAELFS LEDKPAMTKD LVLCGSALSQ DDKRVMEKLA VKLNATISRY
501: WNPSVTHVIA STNEKGACTR TLKVLMGILN GKWIINADWM KASLEASQPV DEEQYEIHID TQGCQDGPKT ARLRAASNKP KLFDGLKFYF HGDFFKGYKE
601: DLQNLLKVAG GTILKTEDEL TAENSNNVSE SDQRSSSTIV VYNIDPPPGC GLGEEVTIIW QRANEAEALS SKTGSKVVGH TWLLESIAGY KLHPMIS

Best Arabidopsis Sequence Match ( AT1G04020.1 )
(BLAST)

001: MAEFTNMLMN PWVLHLQKLE LELKCPLCLK LLNRPVLLPC DHVFCDSCVH KSSQVESGCP VCKSKHPKKA RRDLRFMESV ISIYKSLNAA VSVHLPQLQI
101: PNDCNYKNDA LNNSNSPKHG ESEDSEMTDK DVSKRSGGTD SSSRDGSPLP TSEESDPRPK HQDWTEKQLS DHLLLYEFES EYDAANHTPE SYTEQAAKNV
201: RDITASEQPS NAARKRICGD SFIQESSPNP KTQDPTLLRL MESLRSDDPT DYVKAQNHQL PKSHTEQDSK RKRDITASDA MENHLKVPKR ENNLMQKSAD
301: IDCNGKCSAN SDDQLSEKIS KALEQTSSNI TICGFCQSAR VSEATGEMLH YSRGRPVDGD DIFRSNVIHV HSACIEWAPQ VYYEGDTVKN LKAELARGMK
401: IKCTKCSLKG AALGCFVKSC RRSYHVPCAR EISRCRWDYE DFLLLCPAHS SVKFPNEKSG HRVSRAEPLP KINPAELCSL EQTPAFTKEL VLCGSALSKS
501: DKKLMESLAV RFNATISRYW NPSVTHVIAS TDEKGACTRT LKVLMGILNG KWIINAAWMK ASLKASQPVD EEPFEIQIDT QGCQDGPKTA RLRAETNKPK
601: LFEGLKFYFF GDFYKGYKED LQNLVKVAGG TILNTEDELG AESSNNVNDQ RSSSIVVYNI DPPHGCALGE EVTIIWQRAN DAEALASQTG SRLVGHTWVL
701: ESIAGYKLHP VIG

Arabidopsis Description

ATBARD1Breast cancer associated RING 1 [Source:UniProtKB/TrEMBL;Acc:A0A2H1ZEA6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.