Factsheet for Os05t0486600-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 4
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU85242	Sorghum	nucleus	34.59	46.06
TraesCS1B01G315000.1	Wheat	nucleus	37.28	41.52
TraesCS1D01G304000.1	Wheat	nucleus	37.46	39.96
Zm00001d017078_P002	Maize	cytosol	37.63	39.77
KXG22233	Sorghum	nucleus	42.29	34.3
HORVU1Hr1G069020.11	Barley	plastid	41.76	33.33
TraesCS2A01G139100.2	Wheat	mitochondrion, plastid	39.07	33.13
TraesCS2D01G142000.2	Wheat	mitochondrion, plastid	38.89	33.08
HORVU0Hr1G002630.3	Barley	mitochondrion	39.25	32.69
VIT_07s0005g03940.t01	Wine grape	plastid	24.19	32.22
TraesCS2B01G163200.1	Wheat	golgi, plasma membrane	37.46	31.48
TraesCS1B01G315300.1	Wheat	plastid	43.01	31.21
TraesCS1D01G304600.1	Wheat	nucleus, plastid	42.47	30.86
Solyc09g066090.2.1	Tomato	nucleus	12.01	30.73
Solyc12g042000.1.1	Tomato	nucleus	10.93	29.47
TraesCS1A01G304700.1	Wheat	nucleus	42.29	29.03
Solyc05g016230.2.1	Tomato	nucleus	23.12	28.73
Solyc09g066080.1.1	Tomato	cytosol	12.19	27.87
GSMUA_Achr8P13610_001	Banana	cytosol	26.7	27.24
Solyc12g041980.1.1	Tomato	mitochondrion	11.47	26.02
CDY68257	Canola	mitochondrion, plastid	9.86	23.61
Os04t0512400-01	Rice	cytosol	25.81	22.89
Solyc06g008210.2.1	Tomato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	27.06	21.51
KRG95712	Soybean	nucleus	25.99	21.48
PGSC0003DMT400038153	Potato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	26.7	21.13
KRH67433	Soybean	nucleus	25.27	20.8
AT1G04020.1	Thale cress	nucleus	23.84	18.65
CDY10084	Canola	vacuole	22.94	18.36
Os05t0512000-01	Rice	extracellular	22.22	12.56
Bra032532.1-P	Field mustard	nucleus	23.12	11.43
CDY32524	Canola	cytosol	21.33	10.88

Protein Annotations

MapMan:14.3.1.1	Gene3D:3.30.40.10	Gene3D:3.40.50.10190	UniProt:A0A0P0WNT7	ProteinID:BAS94620.1	InterPro:BRCA1-associated
InterPro:BRCT_dom	InterPro:BRCT_dom_sf	InterPro:EPHD	GO:GO:0003674	GO:GO:0005488	GO:GO:0006139
GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0006974	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0046872	InterPro:IPR001357	InterPro:IPR013083	InterPro:IPR034732	InterPro:IPR036420
EnsemblPlantsGene:Os05g0486600	EnsemblPlants:Os05t0486600-01	PFAM:PF00533	PFAM:PF13771	PFscan:PS50172	PFscan:PS51805
PANTHER:PTHR13763	PANTHER:PTHR13763:SF6	SMART:SM00292	SUPFAM:SSF52113	UniParc:UPI0003939F65	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

BARD1Hypothetical conserved gene. (Os05t0486600-01)

Coordinates

chr5:-:23931558..23936930

Molecular Weight (calculated)

62105.0 Da

IEP (calculated)

6.095

GRAVY (calculated)

-0.495

Length

558 amino acids

Sequence
(BLAST)

001: LTRQSIFLSK SRLVRNKTAL AAEGSNEKAA VDANEVSLPL SNLSNTRQHS DRENNMPGKH GNDGMSKDMG RATRLKRLQT PINLFEDECV FCHSFRTPPQ
101: FHGPMAHYQK GKLVSSDNGS PCPTDIIYVH KKCLEWAPQV FYEGDTIVNL ELEIKRAAKL KCKRCKLPGA ALGCYYTKCN RSYHVPCAMM TLNCRWDVDN
201: GCVMCPEHAT MPLPCDKISS PRNESGNSSS FPQSQSSIEQ SDSADCEWEY PIIDQWNTSS SLSQGQSSAK EGISAVPKRE IDQLNTSCSS FPEGQYLDKE
301: GISTDEYRKE KQTDHLYTER DCPSDLWVLL GSALSESEKD SLQEFASWTD ATVVNEWTEN VTHVIVGKSA GSAWSRSYEV LMALLFGKWV VTVGWIMDCL
401: VKFIPSPEAS FELRFSHDSR ASIGGNKKRR NQASEGAQKL FSGLNFCLSA YINPDDRQHI QSLIAAAGGQ ILETNGGSHL LRENLEKVAV KPCYFVYDGG
501: APRDFTQGLL DDLPKEMEEG REYAACGAQV ISHLRVFDAI AAYDAQILSH KDHFTPDV

Best Arabidopsis Sequence Match ( AT1G04020.1 )
(BLAST)

001: MAEFTNMLMN PWVLHLQKLE LELKCPLCLK LLNRPVLLPC DHVFCDSCVH KSSQVESGCP VCKSKHPKKA RRDLRFMESV ISIYKSLNAA VSVHLPQLQI
101: PNDCNYKNDA LNNSNSPKHG ESEDSEMTDK DVSKRSGGTD SSSRDGSPLP TSEESDPRPK HQDWTEKQLS DHLLLYEFES EYDAANHTPE SYTEQAAKNV
201: RDITASEQPS NAARKRICGD SFIQESSPNP KTQDPTLLRL MESLRSDDPT DYVKAQNHQL PKSHTEQDSK RKRDITASDA MENHLKVPKR ENNLMQKSAD
301: IDCNGKCSAN SDDQLSEKIS KALEQTSSNI TICGFCQSAR VSEATGEMLH YSRGRPVDGD DIFRSNVIHV HSACIEWAPQ VYYEGDTVKN LKAELARGMK
401: IKCTKCSLKG AALGCFVKSC RRSYHVPCAR EISRCRWDYE DFLLLCPAHS SVKFPNEKSG HRVSRAEPLP KINPAELCSL EQTPAFTKEL VLCGSALSKS
501: DKKLMESLAV RFNATISRYW NPSVTHVIAS TDEKGACTRT LKVLMGILNG KWIINAAWMK ASLKASQPVD EEPFEIQIDT QGCQDGPKTA RLRAETNKPK
601: LFEGLKFYFF GDFYKGYKED LQNLVKVAGG TILNTEDELG AESSNNVNDQ RSSSIVVYNI DPPHGCALGE EVTIIWQRAN DAEALASQTG SRLVGHTWVL
701: ESIAGYKLHP VIG

Arabidopsis Description

ATBARD1Breast cancer associated RING 1 [Source:UniProtKB/TrEMBL;Acc:A0A2H1ZEA6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.