Factsheet for Solyc09g066080.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g041980.1.1	Tomato	mitochondrion	84.43	83.74
Solyc05g016230.2.1	Tomato	nucleus	84.43	45.88
VIT_07s0005g03940.t01	Wine grape	plastid	49.59	28.88
Solyc06g008210.2.1	Tomato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	68.44	23.79
KRG95712	Soybean	nucleus	54.92	19.85
KRH67433	Soybean	nucleus	54.51	19.62
CDY68257	Canola	mitochondrion, plastid	17.62	18.45
Os04t0512400-01	Rice	cytosol	44.26	17.17
CDY10084	Canola	vacuole	46.31	16.21
TraesCS2A01G384900.1	Wheat	nucleus	40.57	16.05
GSMUA_Achr8P12560_001	Banana	nucleus	41.8	16.01
AT1G04020.1	Thale cress	nucleus	46.72	15.99
HORVU2Hr1G088840.1	Barley	nucleus	40.57	15.92
EES12490	Sorghum	cytosol, nucleus, plasma membrane	40.57	15.89
TraesCS2D01G381600.1	Wheat	cytosol, nucleus, plasma membrane	40.57	15.71
Zm00001d003040_P001	Maize	extracellular, nucleus, vacuole	40.98	15.36
GSMUA_Achr8P13610_001	Banana	cytosol	34.43	15.36
TraesCS2B01G401900.1	Wheat	nucleus, plasma membrane, vacuole	34.02	14.54
OQU85242	Sorghum	nucleus	23.36	13.6
Zm00001d017078_P002	Maize	cytosol	28.28	13.07
Os05t0486600-01	Rice	mitochondrion	27.87	12.19
Solyc12g042000.1.1	Tomato	nucleus	10.25	12.08
TraesCS1B01G315000.1	Wheat	nucleus	24.18	11.78
TraesCS1D01G304000.1	Wheat	nucleus	24.59	11.47
Bra032532.1-P	Field mustard	nucleus	48.36	10.45
HORVU1Hr1G069020.11	Barley	plastid	27.87	9.73
KXG22233	Sorghum	nucleus	27.05	9.59
Solyc08g023280.2.1	Tomato	nucleus	38.52	9.42
HORVU0Hr1G002630.3	Barley	mitochondrion	25.0	9.1
CDY32524	Canola	cytosol	40.57	9.05
TraesCS2B01G163200.1	Wheat	golgi, plasma membrane	24.59	9.04
TraesCS2D01G142000.2	Wheat	mitochondrion, plastid	23.77	8.84
TraesCS2A01G139100.2	Wheat	mitochondrion, plastid	23.77	8.81
TraesCS1B01G315300.1	Wheat	plastid	27.46	8.71
TraesCS1D01G304600.1	Wheat	nucleus, plastid	27.05	8.59
TraesCS1A01G304700.1	Wheat	nucleus	27.87	8.36
HORVU2Hr1G088910.1	Barley	plastid	10.66	6.79
Solyc09g066090.2.1	Tomato	nucleus	2.87	3.21

Protein Annotations

MapMan:14.3.1.1	Gene3D:3.40.50.10190	InterPro:BRCA1-associated	InterPro:BRCT_dom	InterPro:BRCT_dom_sf	GO:GO:0000724
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005886	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006464
GO:GO:0006629	GO:GO:0006950	GO:GO:0006974	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	GO:GO:0031436	GO:GO:0035066	GO:GO:0035067	GO:GO:0042127	GO:GO:0045717
GO:GO:0045944	GO:GO:0070531	GO:GO:0071158	InterPro:IPR001357	InterPro:IPR036420	UniProt:K4CUN4
PFAM:PF00533	PFAM:PF16589	PFscan:PS50172	PANTHER:PTHR13763	SMART:SM00292	SUPFAM:SSF52113
EnsemblPlantsGene:Solyc09g066080.1	EnsemblPlants:Solyc09g066080.1.1	UniParc:UPI000276CB4B	:	:	:

Description

No Description!

Coordinates

chr9:-:64437613..64439968

Molecular Weight (calculated)

26908.4 Da

IEP (calculated)

5.695

GRAVY (calculated)

-0.034

Length

244 amino acids

Sequence
(BLAST)

001: MNLTPTIDQL TFWARSSDGP KEWVLCGSAL SSEDKYMLVK FADMCGATVC KFWKPNVTHV VATTDVKGAC TRTMKVLMAI LSGKWILTMD WVKACVAANG
101: PVNEELYEIS LDNYGRSGGP KAGRLRASTN APKLFDGFKF YLVGDFMPAY KSDLLDLVEK AGGTIIQSEE QLVKQNHAAQ GTQPSSLVVY NCDLSQGCTF
201: EEESSILQQR LAEAEDLAKQ ICFHTVQHTW ILESIAACKL VPFC

Best Arabidopsis Sequence Match ( AT1G04020.1 )
(BLAST)

001: MAEFTNMLMN PWVLHLQKLE LELKCPLCLK LLNRPVLLPC DHVFCDSCVH KSSQVESGCP VCKSKHPKKA RRDLRFMESV ISIYKSLNAA VSVHLPQLQI
101: PNDCNYKNDA LNNSNSPKHG ESEDSEMTDK DVSKRSGGTD SSSRDGSPLP TSEESDPRPK HQDWTEKQLS DHLLLYEFES EYDAANHTPE SYTEQAAKNV
201: RDITASEQPS NAARKRICGD SFIQESSPNP KTQDPTLLRL MESLRSDDPT DYVKAQNHQL PKSHTEQDSK RKRDITASDA MENHLKVPKR ENNLMQKSAD
301: IDCNGKCSAN SDDQLSEKIS KALEQTSSNI TICGFCQSAR VSEATGEMLH YSRGRPVDGD DIFRSNVIHV HSACIEWAPQ VYYEGDTVKN LKAELARGMK
401: IKCTKCSLKG AALGCFVKSC RRSYHVPCAR EISRCRWDYE DFLLLCPAHS SVKFPNEKSG HRVSRAEPLP KINPAELCSL EQTPAFTKEL VLCGSALSKS
501: DKKLMESLAV RFNATISRYW NPSVTHVIAS TDEKGACTRT LKVLMGILNG KWIINAAWMK ASLKASQPVD EEPFEIQIDT QGCQDGPKTA RLRAETNKPK
601: LFEGLKFYFF GDFYKGYKED LQNLVKVAGG TILNTEDELG AESSNNVNDQ RSSSIVVYNI DPPHGCALGE EVTIIWQRAN DAEALASQTG SRLVGHTWVL
701: ESIAGYKLHP VIG

Arabidopsis Description

ATBARD1Breast cancer associated RING 1 [Source:UniProtKB/TrEMBL;Acc:A0A2H1ZEA6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.