Factsheet for TraesCS1B01G315300.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G304600.1	Wheat	nucleus, plastid	92.59	92.71
TraesCS1A01G304700.1	Wheat	nucleus	91.68	86.72
HORVU1Hr1G069020.11	Barley	plastid	65.28	71.82
TraesCS2B01G163200.1	Wheat	golgi, plasma membrane	52.41	60.69
TraesCS1B01G315000.1	Wheat	nucleus	38.1	58.48
OQU85242	Sorghum	nucleus	24.06	44.15
Os05t0486600-01	Rice	mitochondrion	31.21	43.01
Zm00001d017078_P002	Maize	cytosol	26.92	39.2
VIT_07s0005g03940.t01	Wine grape	plastid	17.17	31.5
KXG22233	Sorghum	nucleus	27.96	31.25
Solyc09g066090.2.1	Tomato	nucleus	8.32	29.36
Solyc05g016230.2.1	Tomato	nucleus	16.64	28.51
GSMUA_Achr8P13610_001	Banana	cytosol	20.16	28.34
Solyc12g042000.1.1	Tomato	nucleus	7.41	27.54
Solyc09g066080.1.1	Tomato	cytosol	8.71	27.46
Solyc12g041980.1.1	Tomato	mitochondrion	8.71	27.24
CDY68257	Canola	mitochondrion, plastid	7.15	23.61
TraesCS2B01G401900.1	Wheat	nucleus, plasma membrane, vacuole	17.3	23.29
KRG95712	Soybean	nucleus	19.25	21.93
KRH67433	Soybean	nucleus	18.73	21.24
Solyc06g008210.2.1	Tomato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	18.99	20.8
PGSC0003DMT400038153	Potato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	18.73	20.43
CDY10084	Canola	vacuole	17.04	18.79
AT1G04020.1	Thale cress	nucleus	17.43	18.79
TraesCS1B01G343100.2	Wheat	nucleus	18.47	14.19
Bra032532.1-P	Field mustard	nucleus	17.04	11.6
CDY32524	Canola	cytosol	15.73	11.06

Protein Annotations

MapMan:14.3.1.1	Gene3D:3.30.40.10	Gene3D:3.40.50.10190	InterPro:BRCA1-associated	InterPro:BRCT_dom	InterPro:BRCT_dom_sf
InterPro:EPHD	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0006974
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:IPR001357	InterPro:IPR013083	InterPro:IPR034732
InterPro:IPR036420	PFAM:PF00533	PFAM:PF13771	PFscan:PS50172	PFscan:PS51805	PANTHER:PTHR13763
PANTHER:PTHR13763:SF6	SMART:SM00249	SMART:SM00292	SUPFAM:SSF52113	EnsemblPlantsGene:TraesCS1B01G315300	EnsemblPlants:TraesCS1B01G315300.1
InterPro:Znf_PHD	InterPro:Znf_RING/FYVE/PHD	TIGR:cd00027	SEG:seg	:	:

Description

No Description!

Coordinates

chr1B:-:539657462..539662468

Molecular Weight (calculated)

83952.9 Da

IEP (calculated)

5.919

GRAVY (calculated)

-0.506

Length

769 amino acids

Sequence
(BLAST)

001: MGSGSGAVVW REILASSPPP GFGRPTGGLG ATASGSQRPS PAPGFGAARP SSTQSGGTKS ATRTDMLVDI GTEAGCDNLE VPRHVGNGSA SPAKGTKRKF
101: VVDATKGASP GVNASNTGQH LHSRRKGKGP GKHAKLEDNK GATRLGRDQT PIGVFEDECV FCHSFRTSEQ FHGPMVLYHN RRIVPSDEGI PTNAIYVHEK
201: CMVWAPKVES NGDTFKNVES EINRSKRLRC RRCKLRGAAL GCIDNSCRKS YHVPCAMMIP ECRWDDENRR VWCPKHAPPD QMSSPTMESD TLSPVLQNHS
301: SQCPAKEVSV DFQMEDERIN PLPCDEMSSQ IIESDITSAV LQSHSSQCPT KEISVNCQME DEHINPLPGD EMSSPIIETD ITSAVLQNHS SQCPAKEISV
401: DCQMEDEHIN PLPGDEMSSP IIETDITSAV LQNHSSQCPA KEISSDCQME NEHINPLATS NSSLPGHVPG QYLVKGGTSV LHRREDLQVD QLNTLSSSLP
501: QGLCSDRGRI SANHRREEKL VNQSSTPVDQ WVLLGIPLSA SEKDSLKEFA SLTSSTLAEE WDKNVTHVIV GRNAGDACGR SYEVLMAILS GKWVVTAGWI
601: VDCLVEPIPD LKTCLEKPIP GPEISYEMNF CDGSCTSGYG PMKGRARAAE RAPKLFSGLH FCLSAYIDPE DRETIQRLVA AGEGQVLEGI SPDRLHENLN
701: RNPAEVYFIY DSGPPRKITS DFDLILGKEI QESVEYAKSG AQVISHRRLL DAILCYDARI LERRPHQDM

Best Arabidopsis Sequence Match ( AT1G04020.1 )
(BLAST)

001: MAEFTNMLMN PWVLHLQKLE LELKCPLCLK LLNRPVLLPC DHVFCDSCVH KSSQVESGCP VCKSKHPKKA RRDLRFMESV ISIYKSLNAA VSVHLPQLQI
101: PNDCNYKNDA LNNSNSPKHG ESEDSEMTDK DVSKRSGGTD SSSRDGSPLP TSEESDPRPK HQDWTEKQLS DHLLLYEFES EYDAANHTPE SYTEQAAKNV
201: RDITASEQPS NAARKRICGD SFIQESSPNP KTQDPTLLRL MESLRSDDPT DYVKAQNHQL PKSHTEQDSK RKRDITASDA MENHLKVPKR ENNLMQKSAD
301: IDCNGKCSAN SDDQLSEKIS KALEQTSSNI TICGFCQSAR VSEATGEMLH YSRGRPVDGD DIFRSNVIHV HSACIEWAPQ VYYEGDTVKN LKAELARGMK
401: IKCTKCSLKG AALGCFVKSC RRSYHVPCAR EISRCRWDYE DFLLLCPAHS SVKFPNEKSG HRVSRAEPLP KINPAELCSL EQTPAFTKEL VLCGSALSKS
501: DKKLMESLAV RFNATISRYW NPSVTHVIAS TDEKGACTRT LKVLMGILNG KWIINAAWMK ASLKASQPVD EEPFEIQIDT QGCQDGPKTA RLRAETNKPK
601: LFEGLKFYFF GDFYKGYKED LQNLVKVAGG TILNTEDELG AESSNNVNDQ RSSSIVVYNI DPPHGCALGE EVTIIWQRAN DAEALASQTG SRLVGHTWVL
701: ESIAGYKLHP VIG

Arabidopsis Description

ATBARD1Breast cancer associated RING 1 [Source:UniProtKB/TrEMBL;Acc:A0A2H1ZEA6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.