Factsheet for TraesCS1B01G343100.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G164600.1
TraesCS5B01G162100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G21070.1	TraesCS5A01G164600.1	AT4G04020.1	16957774
AT4G21070.1	TraesCS5B01G162100.1	AT4G04020.1	16957774

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G331700.1	Wheat	nucleus	89.31	92.93
TraesCS1A01G329600.1	Wheat	nucleus	91.01	91.93
HORVU4Hr1G010810.1	Barley	cytosol	4.2	89.36
HORVU1Hr1G077590.4	Barley	plastid	82.12	81.31
Os05t0512000-01	Rice	extracellular	60.64	61.5
EES18483	Sorghum	nucleus	59.34	59.64
Zm00001d038667_P001	Maize	nucleus	52.55	57.24
Bra037622.1-P	Field mustard	nucleus	3.0	54.55
GSMUA_Achr6P29980_001	Banana	nucleus	40.46	41.33
CDX76414	Canola	nucleus	32.27	36.05
Bra020883.1-P	Field mustard	nucleus	32.27	35.97
CDX82797	Canola	nucleus	31.97	35.52
AT4G21070.1	Thale cress	nucleus	33.07	35.18
CDY57063	Canola	nucleus	31.77	34.53
CDX79031	Canola	nucleus	31.67	34.16
Solyc08g023280.2.1	Tomato	nucleus	32.37	32.46
TraesCS2B01G401900.1	Wheat	nucleus, plasma membrane, vacuole	17.48	30.65
PGSC0003DMT400013749	Potato	nucleus	32.07	30.37
KRH11144	Soybean	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	33.97	23.81
TraesCS1B01G315000.1	Wheat	nucleus	10.79	21.56
TraesCS2B01G163200.1	Wheat	golgi, plasma membrane	12.49	18.83
TraesCS1B01G315300.1	Wheat	plastid	14.19	18.47

Protein Annotations

MapMan:14.3.1.1	Gene3D:3.30.40.10	Gene3D:3.40.50.10190	InterPro:BRCA1-associated	InterPro:BRCT_dom	InterPro:BRCT_dom_sf
InterPro:EPHD	GO:GO:0000724	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281
GO:GO:0006310	GO:GO:0006464	GO:GO:0006950	GO:GO:0006974	GO:GO:0008150	GO:GO:0008152
GO:GO:0009628	GO:GO:0009987	GO:GO:0010332	GO:GO:0016740	GO:GO:0019538	GO:GO:0071480
InterPro:IPR001357	InterPro:IPR001841	InterPro:IPR013083	InterPro:IPR034732	InterPro:IPR036420	PFAM:PF00533
PFAM:PF13639	PFAM:PF13771	ScanProsite:PS00518	PFscan:PS50089	PFscan:PS50172	PFscan:PS51805
PANTHER:PTHR13763	PANTHER:PTHR13763:SF1	SMART:SM00184	SMART:SM00292	SUPFAM:SSF52113	SUPFAM:SSF57850
EnsemblPlantsGene:TraesCS1B01G343100	EnsemblPlants:TraesCS1B01G343100.2	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	TIGR:cd00027
TIGR:cd15571	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1B:+:571436697..571441439

Molecular Weight (calculated)

109617.0 Da

IEP (calculated)

8.994

GRAVY (calculated)

-0.629

Length

1001 amino acids

Sequence
(BLAST)

0001: MADMGSLERM GRELKCPICL SLLRSAVSVT CNHIFCNHCL TESMKSSSTC PVCKVPFRRR EIRPAPHMDN LVGILKSMEA ASGSNVVSTQ VTSTAQVADG
0101: SKHDNSGKKS ERLPKSTVQK KKIPSEKKAK KTKPTLASAS GPTKKPSFSA NKRIHVTPFP ESETPMRPQK IMKSEEMKDK LNGDVQEGKD KASASDKLGG
0201: FSLSPFFWLR EGEDAEGGTL ETLSEPPSLA TPLRHNAPTF SDIKGSDAGT PPNTTPNLFE LQSKAVVPDA FDSEIFEWSQ RPCSPELRST PQKKQGKFQD
0301: ILDHIAEKDD EEDIQLGGSF DESGHTNNAA QPVNANKEMK QKGKKARGGN SRKIKLLEVI TKEADANQQD SNITKSLAAK SCEKNSSTIE KNTSSRRNKA
0401: GNGINLFPCS DDNSMGTFHP RENSLEIEVH DGHLPERSQK KEKSGQQKKC ARKLGTTGKS SVETTESNSD PRSKRVRKMP DGVNAEKIGV IDVSRNETEM
0501: PLLHSFMKSC TQHELLDGRS KKSSKKSKFS EEMNSQIGPD SMKSNISANT SSILLGRCQS SEAIRAACSP MDASVKNKCA KGTKQTDCSG MKNFGKLQAC
0601: TGNTFLKKCD DTVSKVFCAF CQSADITEES GEMVHYHNGK QVPAEFGGGA NVVHSHKNCM EWAPDVYFEN DSVFNLAPEL TRSKRIKCAC CGVKGAALGC
0701: FDKSCRRSFH FTCAKLIPEC RWDNENFVML CPLHQSSKLP NEVSEPQKQS KRITAPKCPS QVRSSQACSN NWKWPSGSPQ KWVLCCSALS AAEKGAVTEF
0801: AKLAGVPISK SWSPSVTHVI ASTDPSGACK RTLKFLMAIL NGKWIVSINW VKACMDGMEP ADEQKFEVTT DVHGVREGPK LGRQRVINKQ PRLLNGMQFY
0901: LHGDYTMTYR GFLQDLVVAA GGTVLHRKPV SRDHQKLLDD SSPVIVVYSL ENQGKANLDG NDYYRRRQAD DAQALAFASG GVAASSAWII DSVAACKLQP
1001: L

Best Arabidopsis Sequence Match ( AT4G21070.1 )
(BLAST)

001: MADTSHLERM GRELKCPICL SLYNSAVSLS CNHVFCNACI VKSMKMDATC PVCKIPYHRR EIRGAPHMDS LVSIYKNMED ASGIKLFVSQ NNPSPSDKEK
101: QVRDASVEKA SDKNRQGSRK GRASKRNEYG KTKEIDVDAP GPIVMKPSSQ TKKRVQLLQN LSAESLTKPT ESVETAEKPK DYTENTVIRL DEHPSLNKEG
201: NLSPFFWLRD EDDGENSSQR TESDQLLGTT PVNVPSFSDL MDSDHESPSK EDEQQKPNPG DMFDSEMFEW TQRPCSPEIL PSPVKAKVLG RDEIDLTQKK
301: LPKVKVASSK CKNRKAGSAR NTVARRSIGV SQEDNMESSA AATISEQQDS RGTSGTIIRN DVNTDENVKA KRATRSKAQS TRVQSDLNVS NEADGKQGTK
401: RKRSSIKSSP AHPIAGPNEL SLGTEIVGKG DQDQAHGPSD THPEKRSPTE KPSLKKRGRK SNASSSLKDL SGKTQKKTSE KKLKLDSHMI SSKATQPHGN
501: GILTAGLNQG GDKQDSRNNR KSTVGKDDHT MQVIEKCSTI NKSSSGGSAH LRRCNGSLTK KFTCAFCQCS EDTEASGEMT HYYRGEPVSA DFNGGSKVIH
601: VHKNCAEWAP NVYFNDLTIV NLDVELTRSR RISCSCCGLK GAALGCYNKS CKNSFHVTCA KLIPECRWDN VKFVMLCPLD ASIKLPCEEA NSKDRKCKRT
701: PKEPLHSQPK QVSGKANIRE LHIKQFHGFS KKLVLSCSGL TVEEKTVIAE FAELSGVTIS KNWDSTVTHV IASINENGAC KRTLKFMMAI LEGKWILTID
801: WIKACMKNTK YVSEEPYEIT MDVHGIREGP YLGRQRALKK KPKLFTGLKF YIMGDFELAY KGYLQDLIVA AGGTILRRRP VSSDDNEAST IVVFSVEPSK
901: KKTLTQRRSD AEALAKSARA RAASSSWVLD SIAGCQILVL I

Arabidopsis Description

BRCA1Protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q8RXD4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.