Factsheet for Zm00001d038667_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003470_P001
Zm00001d025574_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G21070.1	Zm00001d003470_P001	AT4G04020.1	16957774
AT4G21070.1	Zm00001d025574_P001	AT4G04020.1	16957774

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES18483	Sorghum	nucleus	76.17	70.28
Os05t0512000-01	Rice	extracellular	58.0	54.0
TraesCS1A01G329600.1	Wheat	nucleus	57.24	53.08
TraesCS1B01G343100.2	Wheat	nucleus	57.24	52.55
TraesCS1D01G331700.1	Wheat	nucleus	54.41	51.98
HORVU1Hr1G077590.4	Barley	plastid	54.84	49.85
GSMUA_Achr6P29980_001	Banana	nucleus	39.06	36.63
Bra020883.1-P	Field mustard	nucleus	31.23	31.96
CDX76414	Canola	nucleus	31.12	31.92
CDX82797	Canola	nucleus	30.36	30.97
CDY57063	Canola	nucleus	30.79	30.73
AT4G21070.1	Thale cress	nucleus	31.45	30.71
CDX79031	Canola	nucleus	30.47	30.17
Solyc08g023280.2.1	Tomato	nucleus	31.66	29.16
PGSC0003DMT400013749	Potato	nucleus	31.66	27.53
Zm00001d003040_P001	Maize	extracellular, nucleus, vacuole	19.37	27.34
KRH11144	Soybean	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	34.28	22.06
Zm00001d017078_P002	Maize	cytosol	12.19	21.21
HORVU4Hr1G010810.1	Barley	cytosol	0.87	17.02
Bra037622.1-P	Field mustard	nucleus	0.98	16.36

Protein Annotations

MapMan:14.3.1.1	Gene3D:3.30.40.10	Gene3D:3.40.50.10190	UniProt:A0A1D6M7Z6	ProteinID:AQK87145.1	InterPro:BRCA1-associated
InterPro:BRCT_dom	InterPro:BRCT_dom_sf	InterPro:EPHD	GO:GO:0000724	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006310	GO:GO:0006464	GO:GO:0006950
GO:GO:0006974	GO:GO:0008150	GO:GO:0008152	GO:GO:0009628	GO:GO:0009987	GO:GO:0010332
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0046872	GO:GO:0071480	InterPro:IPR001357
InterPro:IPR001841	InterPro:IPR013083	InterPro:IPR034732	InterPro:IPR036420	PFAM:PF13771	PFAM:PF13920
ScanProsite:PS00518	PFscan:PS50089	PFscan:PS50172	PFscan:PS51805	PANTHER:PTHR13763	PANTHER:PTHR13763:SF1
SMART:SM00184	SMART:SM00292	SUPFAM:SSF52113	SUPFAM:SSF57850	UniParc:UPI00084493EC	EnsemblPlantsGene:Zm00001d038667
EnsemblPlants:Zm00001d038667_P001	EnsemblPlants:Zm00001d038667_T001	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	SEG:seg

Description

Protein BREAST CANCER SUSCEPTIBILITY 1 homolog

Coordinates

chr6:+:162268229..162273500

Molecular Weight (calculated)

101234.0 Da

IEP (calculated)

8.848

GRAVY (calculated)

-0.573

Length

919 amino acids

Sequence
(BLAST)

001: MADVGSLERM GRELKCPICL SLLTSAVSIT CNHIFCNACL TESKKSASCC PVCKVPFHRR EIRPAPHMDN LVAVFKSMEA AAECSEYTAG KPRRSNKKKL
101: ASKKEKNTVK ATANSASCST AKPSISKNKR IHVTPFPESE TPIRPKKIMK SDEQKRKEDK DNTLNSDIPD NPSLSPFFWL KEQEENVGGT AETLSEPLSL
201: DTALCHNVPT FSDIKDSDDE MPNDMTPNSK VEVSELFDSE IFEWSQRPCS PELRSTPLKK QGQSKNTLDQ ITEVDDGGYM NLGDLFDKLD HESNVTQPAN
301: AEEAKKRKLA RARNRKNSKL PSRVKLCTKG SDAEHQVKNI PVSIAAKPNQ KDINKKKRCT LNGGNKVSGN NTKVVFSSDK YMYTFSPQSG GLDIEAPENQ
401: PSERILKKPK NSRSKLHIAG DSAVKTAKNK SEQRVKQTIR CSGGVVDENL RVLSEAENEI ESFQLHRLAK GCTQHKPFDD RSKQNMESNI GPNTPSILPG
501: RCQFDEAIHT IPTVKNVSVK NGRAKSIEQP DYPGSIRLCT AHNTALKKCE GKASKLSCAF CQSDDTTQES GEMVHYHNGK QVPAAFDAGA GVVHCHKNCL
601: EWAPDVYFED DSVFNLANEL ARSKRIKCAC CGIKGAALGC FETSCRKSFH LTCARLIPEC RWDNENFVML CPLHQSSKLP RETSGFKNKS HRKLARKSSS
701: EVNTSQSHDN KWTWPSGSPP KWVLCCSALS AAEKGIVSEL AKIAGVPIST SWSPNVTHVI ASTNMSGSCK RTLKFLMAIL NGKWVISMDS IFSSNNIFLI
801: VTQQPKLFDG IQFYLHGDYT KSYRGYLQDL VVAAGGTVLQ RKPVSRNHQK LLDESSLILI VYSIENQDKA KPGSSDGMDT GRSQADAQAL ACASGGKAVS
901: SAWIIDSIAA CNLRPSMLP

Best Arabidopsis Sequence Match ( AT4G21070.1 )
(BLAST)

001: MADTSHLERM GRELKCPICL SLYNSAVSLS CNHVFCNACI VKSMKMDATC PVCKIPYHRR EIRGAPHMDS LVSIYKNMED ASGIKLFVSQ NNPSPSDKEK
101: QVRDASVEKA SDKNRQGSRK GRASKRNEYG KTKEIDVDAP GPIVMKPSSQ TKKRVQLLQN LSAESLTKPT ESVETAEKPK DYTENTVIRL DEHPSLNKEG
201: NLSPFFWLRD EDDGENSSQR TESDQLLGTT PVNVPSFSDL MDSDHESPSK EDEQQKPNPG DMFDSEMFEW TQRPCSPEIL PSPVKAKVLG RDEIDLTQKK
301: LPKVKVASSK CKNRKAGSAR NTVARRSIGV SQEDNMESSA AATISEQQDS RGTSGTIIRN DVNTDENVKA KRATRSKAQS TRVQSDLNVS NEADGKQGTK
401: RKRSSIKSSP AHPIAGPNEL SLGTEIVGKG DQDQAHGPSD THPEKRSPTE KPSLKKRGRK SNASSSLKDL SGKTQKKTSE KKLKLDSHMI SSKATQPHGN
501: GILTAGLNQG GDKQDSRNNR KSTVGKDDHT MQVIEKCSTI NKSSSGGSAH LRRCNGSLTK KFTCAFCQCS EDTEASGEMT HYYRGEPVSA DFNGGSKVIH
601: VHKNCAEWAP NVYFNDLTIV NLDVELTRSR RISCSCCGLK GAALGCYNKS CKNSFHVTCA KLIPECRWDN VKFVMLCPLD ASIKLPCEEA NSKDRKCKRT
701: PKEPLHSQPK QVSGKANIRE LHIKQFHGFS KKLVLSCSGL TVEEKTVIAE FAELSGVTIS KNWDSTVTHV IASINENGAC KRTLKFMMAI LEGKWILTID
801: WIKACMKNTK YVSEEPYEIT MDVHGIREGP YLGRQRALKK KPKLFTGLKF YIMGDFELAY KGYLQDLIVA AGGTILRRRP VSSDDNEAST IVVFSVEPSK
901: KKTLTQRRSD AEALAKSARA RAASSSWVLD SIAGCQILVL I

Arabidopsis Description

BRCA1Protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q8RXD4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.