Factsheet for Zm00001d017078_P002

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU85242	Sorghum	nucleus	51.7	65.16
Os05t0486600-01	Rice	mitochondrion	39.77	37.63
TraesCS1B01G315000.1	Wheat	nucleus	33.14	34.93
TraesCS1D01G304000.1	Wheat	nucleus	32.77	33.08
VIT_07s0005g03940.t01	Wine grape	plastid	24.05	30.31
HORVU0Hr1G002630.3	Barley	mitochondrion	37.69	29.7
HORVU1Hr1G069020.11	Barley	plastid	38.64	29.18
TraesCS2D01G142000.2	Wheat	mitochondrion, plastid	36.17	29.12
TraesCS2A01G139100.2	Wheat	mitochondrion, plastid	35.61	28.57
Solyc09g066080.1.1	Tomato	cytosol	13.07	28.28
GSMUA_Achr8P13610_001	Banana	cytosol	29.17	28.15
Solyc12g041980.1.1	Tomato	mitochondrion	13.07	28.05
TraesCS2B01G163200.1	Wheat	golgi, plasma membrane	35.23	28.01
Solyc05g016230.2.1	Tomato	nucleus	23.67	27.84
Solyc09g066090.2.1	Tomato	nucleus	11.17	27.06
TraesCS1B01G315300.1	Wheat	plastid	39.2	26.92
TraesCS1D01G304600.1	Wheat	nucleus, plastid	39.02	26.82
TraesCS1A01G304700.1	Wheat	nucleus	39.2	25.46
Solyc12g042000.1.1	Tomato	nucleus	9.85	25.12
Zm00001d003040_P001	Maize	extracellular, nucleus, vacuole	27.27	22.12
KRG95712	Soybean	nucleus	26.14	20.44
CDY68257	Canola	mitochondrion, plastid	8.9	20.17
Solyc06g008210.2.1	Tomato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	26.7	20.09
PGSC0003DMT400038153	Potato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	26.14	19.57
KRH67433	Soybean	nucleus	25.0	19.47
CDY10084	Canola	vacuole	24.24	18.36
AT1G04020.1	Thale cress	nucleus	23.86	17.67
Zm00001d038667_P001	Maize	nucleus	21.21	12.19
Bra032532.1-P	Field mustard	nucleus	23.3	10.89
CDY32524	Canola	cytosol	22.16	10.69

Protein Annotations

MapMan:14.3.1.1	Gene3D:3.30.40.10	Gene3D:3.40.50.10190	UniProt:A0A1D6HC20	ProteinID:AQK72246.1	InterPro:BRCA1-associated
InterPro:BRCT_dom	InterPro:BRCT_dom_sf	InterPro:EPHD	GO:GO:0003674	GO:GO:0005488	GO:GO:0006139
GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0006974	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0046872	InterPro:IPR001357	InterPro:IPR013083	InterPro:IPR034732	InterPro:IPR036420
PFAM:PF00533	PFAM:PF13771	PFscan:PS50172	PFscan:PS51805	PANTHER:PTHR13763	PANTHER:PTHR13763:SF6
SUPFAM:SSF52113	UniParc:UPI000844CE56	EnsemblPlantsGene:Zm00001d017078	EnsemblPlants:Zm00001d017078_P002	EnsemblPlants:Zm00001d017078_T002	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

BRCA1-associated RING domain protein 1

Coordinates

chr5:+:184648994..184657183

Molecular Weight (calculated)

58212.7 Da

IEP (calculated)

6.302

GRAVY (calculated)

-0.405

Length

528 amino acids

Sequence
(BLAST)

001: MSRKRAFSEE IGGATALKSL PTPIGLFEDE CVFCHSFRTS QFHGPMVCYL KGRVVSIDEC DSSDAIYVHR KCLEWASGIW FKGDIVMDFK PEITRASKLR
101: CARCGLKGAA LGCYYGPCLT SFHVPCAVQT IGCRWDGDGY MLCPQHVSNA LPCDKQGTDT KENYNASSLH QSQHTDKKGS FDDHNRENEQ ADQLNISNAS
201: LLPQTRSPYI EREQVFDSRR RRKNGQTDHL DISTPCVPHN QHSHPKEEIS TDSSRDHHQQ IDQLQTSRSS LPLGACQGEE MESDQPDASS CPADELVLLG
301: LCLSVDEKDF VQKFACWTKA TLAEEWAENV THVIVGKGAG SSWCRSFEVL MAILLGKWVV RFEWVADCLQ LTPGPEASYE VLLLAASSID SLGANDGPKQ
401: SRIRATEGEP KLFSGLCFCL SDLMSPGNRG RTRGLIAAGG GRVLDKRDLR LLPKKDPDPD GRRSPSPVNP RPYFVYDVEA PGGGRFSARL LRREIDEARE
501: QAAAGAQVIG HLSVFDAVAA YDAGILLV

Best Arabidopsis Sequence Match ( AT1G04020.1 )
(BLAST)

001: MAEFTNMLMN PWVLHLQKLE LELKCPLCLK LLNRPVLLPC DHVFCDSCVH KSSQVESGCP VCKSKHPKKA RRDLRFMESV ISIYKSLNAA VSVHLPQLQI
101: PNDCNYKNDA LNNSNSPKHG ESEDSEMTDK DVSKRSGGTD SSSRDGSPLP TSEESDPRPK HQDWTEKQLS DHLLLYEFES EYDAANHTPE SYTEQAAKNV
201: RDITASEQPS NAARKRICGD SFIQESSPNP KTQDPTLLRL MESLRSDDPT DYVKAQNHQL PKSHTEQDSK RKRDITASDA MENHLKVPKR ENNLMQKSAD
301: IDCNGKCSAN SDDQLSEKIS KALEQTSSNI TICGFCQSAR VSEATGEMLH YSRGRPVDGD DIFRSNVIHV HSACIEWAPQ VYYEGDTVKN LKAELARGMK
401: IKCTKCSLKG AALGCFVKSC RRSYHVPCAR EISRCRWDYE DFLLLCPAHS SVKFPNEKSG HRVSRAEPLP KINPAELCSL EQTPAFTKEL VLCGSALSKS
501: DKKLMESLAV RFNATISRYW NPSVTHVIAS TDEKGACTRT LKVLMGILNG KWIINAAWMK ASLKASQPVD EEPFEIQIDT QGCQDGPKTA RLRAETNKPK
601: LFEGLKFYFF GDFYKGYKED LQNLVKVAGG TILNTEDELG AESSNNVNDQ RSSSIVVYNI DPPHGCALGE EVTIIWQRAN DAEALASQTG SRLVGHTWVL
701: ESIAGYKLHP VIG

Arabidopsis Description

ATBARD1Breast cancer associated RING 1 [Source:UniProtKB/TrEMBL;Acc:A0A2H1ZEA6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.