Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G142000.2 | Wheat | mitochondrion, plastid | 81.16 | 81.4 |
| TraesCS2B01G163200.1 | Wheat | golgi, plasma membrane | 75.38 | 74.7 |
| HORVU0Hr1G002630.3 | Barley | mitochondrion | 63.68 | 62.54 |
| TraesCS1A01G304700.1 | Wheat | nucleus | 60.49 | 48.95 |
| OQU85242 | Sorghum | nucleus | 25.23 | 39.62 |
| Os05t0486600-01 | Rice | mitochondrion | 33.13 | 39.07 |
| Zm00001d017078_P002 | Maize | cytosol | 28.57 | 35.61 |
| KXG22233 | Sorghum | nucleus | 31.61 | 30.23 |
| Solyc09g066090.2.1 | Tomato | nucleus | 9.27 | 27.98 |
| VIT_07s0005g03940.t01 | Wine grape | plastid | 17.78 | 27.92 |
| GSMUA_Achr8P13610_001 | Banana | cytosol | 22.95 | 27.61 |
| Solyc05g016230.2.1 | Tomato | nucleus | 18.09 | 26.5 |
| Solyc12g042000.1.1 | Tomato | nucleus | 8.21 | 26.09 |
| CDY68257 | Canola | mitochondrion, plastid | 8.51 | 24.03 |
| Solyc12g041980.1.1 | Tomato | mitochondrion | 8.97 | 23.98 |
| Solyc09g066080.1.1 | Tomato | cytosol | 8.81 | 23.77 |
| TraesCS2A01G384900.1 | Wheat | nucleus | 20.21 | 21.56 |
| KRG95712 | Soybean | nucleus | 21.12 | 20.59 |
| KRH67433 | Soybean | nucleus | 20.67 | 20.06 |
| Solyc06g008210.2.1 | Tomato | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 19.91 | 18.66 |
| PGSC0003DMT400038153 | Potato | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 19.6 | 18.3 |
| CDY10084 | Canola | vacuole | 19.15 | 18.08 |
| AT1G04020.1 | Thale cress | nucleus | 19.3 | 17.81 |
| TraesCS1A01G329600.1 | Wheat | nucleus | 19.0 | 12.61 |
| Bra032532.1-P | Field mustard | nucleus | 19.15 | 11.16 |
| CDY32524 | Canola | cytosol | 18.39 | 11.06 |
Protein Annotations
| MapMan:14.3.1.1 | Gene3D:3.30.40.10 | Gene3D:3.40.50.10190 | InterPro:BRCA1-associated | InterPro:BRCT_dom | InterPro:BRCT_dom_sf |
| InterPro:EPHD | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006281 | GO:GO:0006950 | GO:GO:0006974 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | InterPro:IPR001357 | InterPro:IPR013083 | InterPro:IPR034732 |
| InterPro:IPR036420 | PFAM:PF00533 | PFAM:PF13771 | PFscan:PS50172 | PFscan:PS51805 | PANTHER:PTHR13763 |
| PANTHER:PTHR13763:SF6 | SMART:SM00292 | SUPFAM:SSF52113 | EnsemblPlantsGene:TraesCS2A01G139100 | EnsemblPlants:TraesCS2A01G139100.2 | InterPro:Znf_RING/FYVE/PHD |
| TIGR:cd00027 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr2A:+:84544759..84549195
Molecular Weight (calculated)
71806.9 Da
IEP (calculated)
7.565
GRAVY (calculated)
-0.468
Length
658 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKRGRPRRG STGITSSPPP GFGPAAAAGA RRSSARSAGT ISAARTDMLF NVEIQPGYAD PESLRHFWNK SASPVKGRKR KFGVDATKGE SAGVNASNTR
101: EHLRSCRKGK GPGKRARLVD KEGATGLGRV QTPTGLYKDE CAFCQSFRTS EPVHGPLVQY HNGRIVSGDE ADATNAIYVH HKCMVWAPKV KSNDDGTFEN
201: VESEIVRGSR WDCSRCNLRG AALGCYRAGC PNTYHVPCAF MIPECRWDVE NLHVWCPMHA PPDEMSSPTI ETGILSPVPQ NQSPAKEISA DCQIEDNQIN
301: PLLGNEMSSP IIGSDIPSAV LQNNCPAKEI SVDSQMEDKQ FNPLVTSNSP LSGLVVPGSS QYLIKEGISA LHRGEDLQVD QLNTSSSSSP QGQCKDKEGI
401: STNYRAEDKL ANQSSTPLDQ WVLLGIALSA SEKDSLKEFA SLTSSTLAQE WDKTVTHVIV GRNAGFRCPR SYEVQMAILS GKWVVTDRWV VDFLVERISG
501: PNPCLAKLIP SPEISYEVKF RDGPRTSIDG PAKGRAGAAE GARKLLSGLH FCFSAYMYPE DRKDIQNLIA AGGGQLLEGI SPDGLREYLK RNPAEVYFIY
601: HGGPPRTPTS DFEPEFQECN KYVGSGARMI KHLQLFDAIL YYDARMLEPT GVFTKICE
101: EHLRSCRKGK GPGKRARLVD KEGATGLGRV QTPTGLYKDE CAFCQSFRTS EPVHGPLVQY HNGRIVSGDE ADATNAIYVH HKCMVWAPKV KSNDDGTFEN
201: VESEIVRGSR WDCSRCNLRG AALGCYRAGC PNTYHVPCAF MIPECRWDVE NLHVWCPMHA PPDEMSSPTI ETGILSPVPQ NQSPAKEISA DCQIEDNQIN
301: PLLGNEMSSP IIGSDIPSAV LQNNCPAKEI SVDSQMEDKQ FNPLVTSNSP LSGLVVPGSS QYLIKEGISA LHRGEDLQVD QLNTSSSSSP QGQCKDKEGI
401: STNYRAEDKL ANQSSTPLDQ WVLLGIALSA SEKDSLKEFA SLTSSTLAQE WDKTVTHVIV GRNAGFRCPR SYEVQMAILS GKWVVTDRWV VDFLVERISG
501: PNPCLAKLIP SPEISYEVKF RDGPRTSIDG PAKGRAGAAE GARKLLSGLH FCFSAYMYPE DRKDIQNLIA AGGGQLLEGI SPDGLREYLK RNPAEVYFIY
601: HGGPPRTPTS DFEPEFQECN KYVGSGARMI KHLQLFDAIL YYDARMLEPT GVFTKICE
001: MAEFTNMLMN PWVLHLQKLE LELKCPLCLK LLNRPVLLPC DHVFCDSCVH KSSQVESGCP VCKSKHPKKG KRDLRFMESV ISIYKSLNAA VSVHLPQLQI
101: PNDCNYKNDA LNNSNSPKHG ESEDSEMTDK DVSKRSGGTD SSSRDGSPLP TSEESDPRPK HQDWTEKQLS DHLLLYEFES EYDAANHTPE SYTEQAAKNV
201: RDITASEQPS NAARKRICGD SFIQESSPNP KTQDPTLLRL MESLRSDDPT DYVKAQNHQL PKSHTEQDSK RKRDITASDA MENHLKVPKR ENNLMQKSAD
301: IDCNGKCSAN SDDQLSEKIS KALEQTSSNI TICGFCQSAR VSEATGEMLH YSRGRPVDGD DIFRSNVIHV HSACIEWAPQ VYYEGDTVKN LKAELARGMK
401: IKCTKCSLKG AALGCFVKSC RRSYHVPCAR EISRCRWDYE DFLLLCPAHS SVKFPNEKSG HRVSRAEPLP KINPAELCSL EQTPAFTKEL VLCGSALSKS
501: DKKLMESLAV RFNATISRYW NPSVTHVIAS TDEKGACTRT LKVLMGILNG KWIINAAWMK ASLKASQPVD EEPFEIQIDT QGCQDGPKTA RLRAETNKPK
601: LFEGLKFYFF GDFYKGYKED LQNLVKVAGG TILNTEDELG AESSNNVNDQ RSSSIVVYNI DPPHGCALGE EVTIIWQRAN DAEALASQTG SRLVGHTWVL
701: ESIAGYKLHP VIG
101: PNDCNYKNDA LNNSNSPKHG ESEDSEMTDK DVSKRSGGTD SSSRDGSPLP TSEESDPRPK HQDWTEKQLS DHLLLYEFES EYDAANHTPE SYTEQAAKNV
201: RDITASEQPS NAARKRICGD SFIQESSPNP KTQDPTLLRL MESLRSDDPT DYVKAQNHQL PKSHTEQDSK RKRDITASDA MENHLKVPKR ENNLMQKSAD
301: IDCNGKCSAN SDDQLSEKIS KALEQTSSNI TICGFCQSAR VSEATGEMLH YSRGRPVDGD DIFRSNVIHV HSACIEWAPQ VYYEGDTVKN LKAELARGMK
401: IKCTKCSLKG AALGCFVKSC RRSYHVPCAR EISRCRWDYE DFLLLCPAHS SVKFPNEKSG HRVSRAEPLP KINPAELCSL EQTPAFTKEL VLCGSALSKS
501: DKKLMESLAV RFNATISRYW NPSVTHVIAS TDEKGACTRT LKVLMGILNG KWIINAAWMK ASLKASQPVD EEPFEIQIDT QGCQDGPKTA RLRAETNKPK
601: LFEGLKFYFF GDFYKGYKED LQNLVKVAGG TILNTEDELG AESSNNVNDQ RSSSIVVYNI DPPHGCALGE EVTIIWQRAN DAEALASQTG SRLVGHTWVL
701: ESIAGYKLHP VIG
Arabidopsis Description
ATBARD1Breast cancer associated RING 1 [Source:UniProtKB/TrEMBL;Acc:A0A2H1ZEA6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.