Factsheet for VIT_07s0005g03940.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g066080.1.1	Tomato	cytosol	28.88	49.59
Solyc12g041980.1.1	Tomato	mitochondrion	28.16	47.97
Solyc05g016230.2.1	Tomato	nucleus	46.06	42.98
Solyc09g066090.2.1	Tomato	nucleus	18.38	35.32
Solyc12g042000.1.1	Tomato	nucleus	16.95	34.3
KRH67433	Soybean	nucleus	49.64	30.68
KRG95712	Soybean	nucleus	49.4	30.67
Os04t0512400-01	Rice	cytosol	44.63	29.73
PGSC0003DMT400038153	Potato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	49.16	29.22
CDY68257	Canola	mitochondrion, plastid	16.23	29.18
GSMUA_Achr8P13610_001	Banana	cytosol	37.95	29.07
Solyc06g008210.2.1	Tomato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	48.21	28.77
GSMUA_Achr8P12560_001	Banana	nucleus	42.48	27.94
EES12490	Sorghum	cytosol, nucleus, plasma membrane	41.53	27.93
TraesCS2A01G384900.1	Wheat	nucleus	40.81	27.71
HORVU2Hr1G088840.1	Barley	nucleus	40.81	27.49
TraesCS2D01G381600.1	Wheat	cytosol, nucleus, plasma membrane	41.05	27.3
TraesCS2B01G401900.1	Wheat	nucleus, plasma membrane, vacuole	36.99	27.15
OQU85242	Sorghum	nucleus	26.97	26.97
Zm00001d003040_P001	Maize	extracellular, nucleus, vacuole	41.05	26.42
CDY10084	Canola	vacuole	43.68	26.26
AT1G04020.1	Thale cress	nucleus	43.68	25.67
TraesCS1B01G315000.1	Wheat	nucleus	29.83	24.95
HORVU2Hr1G088910.1	Barley	plastid	22.67	24.8
TraesCS1D01G304000.1	Wheat	nucleus	30.55	24.47
Os05t0486600-01	Rice	mitochondrion	32.22	24.19
Zm00001d017078_P002	Maize	cytosol	30.31	24.05
KXG22233	Sorghum	nucleus	32.22	19.62
HORVU0Hr1G002630.3	Barley	mitochondrion	30.31	18.96
HORVU1Hr1G069020.11	Barley	plastid	31.5	18.88
TraesCS2D01G142000.2	Wheat	mitochondrion, plastid	29.12	18.6
TraesCS2B01G163200.1	Wheat	golgi, plasma membrane	28.4	17.92
TraesCS2A01G139100.2	Wheat	mitochondrion, plastid	27.92	17.78
TraesCS1D01G304600.1	Wheat	nucleus, plastid	31.5	17.19
TraesCS1B01G315300.1	Wheat	plastid	31.5	17.17
TraesCS1A01G304700.1	Wheat	nucleus	31.5	16.24
Bra032532.1-P	Field mustard	nucleus	43.68	16.21
CDY32524	Canola	cytosol	40.1	15.36

Protein Annotations

EntrezGene:100253255	wikigene:100253255	MapMan:14.3.1.1	Gene3D:3.30.40.10	Gene3D:3.40.50.10190	InterPro:BRCA1-associated
InterPro:BRCT_dom	InterPro:BRCT_dom_sf	ProteinID:CBI37160	ProteinID:CBI37160.3	UniProt:D7U343	InterPro:EPHD
EMBL:FN596502	GO:GO:0000724	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005886	GO:GO:0006139
GO:GO:0006259	GO:GO:0006281	GO:GO:0006464	GO:GO:0006629	GO:GO:0006950	GO:GO:0006974
GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020
GO:GO:0016043	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0031436	GO:GO:0035066
GO:GO:0035067	GO:GO:0042127	GO:GO:0045717	GO:GO:0045944	GO:GO:0046872	GO:GO:0070531
GO:GO:0071158	InterPro:IPR001357	InterPro:IPR013083	InterPro:IPR034732	InterPro:IPR036420	EntrezGene:LOC100253255
wikigene:LOC100253255	PFAM:PF00533	PFAM:PF13771	PFscan:PS50172	PFscan:PS51805	PANTHER:PTHR13763
PANTHER:PTHR13763:SF1	SMART:SM00292	SUPFAM:SSF52113	UniParc:UPI0001BE48F6	ArrayExpress:VIT_07s0005g03940	EnsemblPlantsGene:VIT_07s0005g03940
EnsemblPlants:VIT_07s0005g03940.t01	RefSeq:XP_002271402	RefSeq:XP_002271402.1	InterPro:Znf_RING/FYVE/PHD	:	:

Description

No Description!

Coordinates

chr7:+:6966501..6971245

Molecular Weight (calculated)

46590.5 Da

IEP (calculated)

8.000

GRAVY (calculated)

-0.005

Length

419 amino acids

Sequence
(BLAST)

001: MSYSGNGLIF SSNLESKHIG SISGPHLRSN SGSSDVKEIV CGFCQSSKLS MATGPMLHYA NGKPVQSSNI FDSNVIHVHK KCVDWAPRVY YAGETIINLE
101: KELERSGQLE CSGCGLKGAA LGCYMKHCRK SFHVLCAMKI LHCRWDFENF LMFCPSHSSL KFPSEKSQFG EKSTKNNSKS TQMYISYSFN CCCGVTEWVL
201: CGSALSTKEK FLLVKFGETI CVSVSKYWNP NVTHVITATD VNGACCRTIK VLMAILHGGW ILKIDWVKAC MEALYLVDEE PYEVSLDNYG CRDGPKTGRL
301: RSLDNAPKLF KDLIFYFIGD FVPTYKIDLV DLIRAAGGFV LACKNKLVAQ VHDGRIAPST ALVVYNLEPP QGSMLREDDP VMLWKREAEV LAAMIGSHVI
401: SDRWILDSIA ACRLQPFTL

Best Arabidopsis Sequence Match ( AT1G04020.1 )
(BLAST)

001: MAEFTNMLMN PWVLHLQKLE LELKCPLCLK LLNRPVLLPC DHVFCDSCVH KSSQVESGCP VCKSKHPKKA RRDLRFMESV ISIYKSLNAA VSVHLPQLQI
101: PNDCNYKNDA LNNSNSPKHG ESEDSEMTDK DVSKRSGGTD SSSRDGSPLP TSEESDPRPK HQDWTEKQLS DHLLLYEFES EYDAANHTPE SYTEQAAKNV
201: RDITASEQPS NAARKRICGD SFIQESSPNP KTQDPTLLRL MESLRSDDPT DYVKAQNHQL PKSHTEQDSK RKRDITASDA MENHLKVPKR ENNLMQKSAD
301: IDCNGKCSAN SDDQLSEKIS KALEQTSSNI TICGFCQSAR VSEATGEMLH YSRGRPVDGD DIFRSNVIHV HSACIEWAPQ VYYEGDTVKN LKAELARGMK
401: IKCTKCSLKG AALGCFVKSC RRSYHVPCAR EISRCRWDYE DFLLLCPAHS SVKFPNEKSG HRVSRAEPLP KINPAELCSL EQTPAFTKEL VLCGSALSKS
501: DKKLMESLAV RFNATISRYW NPSVTHVIAS TDEKGACTRT LKVLMGILNG KWIINAAWMK ASLKASQPVD EEPFEIQIDT QGCQDGPKTA RLRAETNKPK
601: LFEGLKFYFF GDFYKGYKED LQNLVKVAGG TILNTEDELG AESSNNVNDQ RSSSIVVYNI DPPHGCALGE EVTIIWQRAN DAEALASQTG SRLVGHTWVL
701: ESIAGYKLHP VIG

Arabidopsis Description

ATBARD1Breast cancer associated RING 1 [Source:UniProtKB/TrEMBL;Acc:A0A2H1ZEA6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.