Factsheet for HORVU1Hr1G069020.11

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G304600.1	Wheat	nucleus, plastid	72.53	66.02
TraesCS1B01G315300.1	Wheat	plastid	71.82	65.28
TraesCS1A01G304700.1	Wheat	nucleus	72.96	62.73
HORVU0Hr1G002630.3	Barley	mitochondrion	51.07	53.28
OQU85242	Sorghum	nucleus	25.75	42.96
Os05t0486600-01	Rice	mitochondrion	33.33	41.76
Zm00001d017078_P002	Maize	cytosol	29.18	38.64
HORVU4Hr1G010810.1	Barley	cytosol	2.15	31.91
VIT_07s0005g03940.t01	Wine grape	plastid	18.88	31.5
KXG22233	Sorghum	nucleus	30.33	30.81
Solyc12g042000.1.1	Tomato	nucleus	8.58	28.99
GSMUA_Achr8P13610_001	Banana	cytosol	22.17	28.34
Solyc05g016230.2.1	Tomato	nucleus	18.03	28.06
Solyc09g066090.2.1	Tomato	nucleus	8.73	27.98
Solyc09g066080.1.1	Tomato	cytosol	9.73	27.87
Solyc12g041980.1.1	Tomato	mitochondrion	9.3	26.42
CDY68257	Canola	mitochondrion, plastid	7.58	22.75
HORVU2Hr1G088910.1	Barley	plastid	11.87	21.67
KRH67433	Soybean	nucleus	20.89	21.53
KRG95712	Soybean	nucleus	20.74	21.48
HORVU2Hr1G088840.1	Barley	nucleus	18.6	20.9
Solyc06g008210.2.1	Tomato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	20.6	20.51
PGSC0003DMT400038153	Potato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	20.17	20.0
CDY10084	Canola	vacuole	18.31	18.36
AT1G04020.1	Thale cress	nucleus	18.45	18.09
HORVU1Hr1G077590.4	Barley	plastid	19.31	13.35
Bra032532.1-P	Field mustard	nucleus	18.17	11.25
CDY32524	Canola	cytosol	16.74	10.69

Protein Annotations

MapMan:14.3.1.1	Gene3D:3.30.40.10	Gene3D:3.40.50.10190	UniProt:A0A287G329	InterPro:BRCA1-associated	InterPro:BRCT_dom
InterPro:BRCT_dom_sf	InterPro:EPHD	GO:GO:0003674	GO:GO:0005488	GO:GO:0006139	GO:GO:0006259
GO:GO:0006281	GO:GO:0006950	GO:GO:0006974	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0046872	EnsemblPlantsGene:HORVU1Hr1G069020	EnsemblPlants:HORVU1Hr1G069020.11	InterPro:IPR001357	InterPro:IPR013083	InterPro:IPR034732
InterPro:IPR036420	PFAM:PF00533	PFAM:PF13771	PFscan:PS50172	PFscan:PS51805	PANTHER:PTHR13763
PANTHER:PTHR13763:SF6	SMART:SM00249	SMART:SM00292	SUPFAM:SSF52113	UniParc:UPI000B466ED1	InterPro:Znf_PHD
InterPro:Znf_RING/FYVE/PHD	:	:	:	:	:

Description

No Description!

Coordinates

chrchr1H:-:482830478..482844253

Molecular Weight (calculated)

77307.4 Da

IEP (calculated)

6.992

GRAVY (calculated)

-0.526

Length

699 amino acids

Sequence
(BLAST)

001: MVSMGTSTGS RSGAVVWREI ASSQPPGFGR PTGSVGGTAS RSERPSPAQG LAAARPSSTH SGGTKSATRT DMLVGIGMEA DCDNLEVPRH VGNERASPAK
101: GRKRKFFIDT TKGASPGVNA SNTGQHLRSC RKGKGPGKHA KLEDNKGATR LGRDQTPIGL FEDECVFCHS FRTSEPWHGP MVVYHNRRIV PSDEGIPTNA
201: VYVHERCMVW APEVESNGDT FKNVENEINR AKRLRCSRCK LRGAALGCYD NSCRKTYHVP CAMMILECRW DVENFRVWCP KHAARDEKRP PTMESDTPSL
301: VLQNHSSQCP AKEISVDCQM EDEHINPLPG DEMSSPLLES DTTSAVLQNH SSQCPTKEIL VECQVEDEHI NPLPSGEVSS LTMESDTLSP VLRNQYLVKG
401: GTSVLHRRED LQVDQLNTSS SSLPQGVFHG YRQCSDKERI SANYRREEKL VNQSSTPVDQ WVLLGVSLSV SEKDSLKEFA SLTSSILAEA WDRNVTHVIV
501: GRNAGDACGK SYEVLMAILS GKWIVTVRWI MDCLVEPIPD VKTCLEKLVP GPEISYEVNF CDGSRTSGYG PTKGRARAAE RAPKLFSGLH FCLSAYMDPE
601: DRETIRRLVA AGGGQVLEGI SPDRLHENLN RNPAEVYFIY DSSPPRKITK DFDLILGKEI QESIEYAKSG AHVISHTKLH DAILYYDARI LERRLHEDM

Best Arabidopsis Sequence Match ( AT1G04020.1 )
(BLAST)

001: MAEFTNMLMN PWVLHLQKLE LELKCPLCLK LLNRPVLLPC DHVFCDSCVH KSSQVESGCP VCKSKHPKKA RRDLRFMESV ISIYKSLNAA VSVHLPQLQI
101: PNDCNYKNDA LNNSNSPKHG ESEDSEMTDK DVSKRSGGTD SSSRDGSPLP TSEESDPRPK HQDWTEKQLS DHLLLYEFES EYDAANHTPE SYTEQAAKNV
201: RDITASEQPS NAARKRICGD SFIQESSPNP KTQDPTLLRL MESLRSDDPT DYVKAQNHQL PKSHTEQDSK RKRDITASDA MENHLKVPKR ENNLMQKSAD
301: IDCNGKCSAN SDDQLSEKIS KALEQTSSNI TICGFCQSAR VSEATGEMLH YSRGRPVDGD DIFRSNVIHV HSACIEWAPQ VYYEGDTVKN LKAELARGMK
401: IKCTKCSLKG AALGCFVKSC RRSYHVPCAR EISRCRWDYE DFLLLCPAHS SVKFPNEKSG HRVSRAEPLP KINPAELCSL EQTPAFTKEL VLCGSALSKS
501: DKKLMESLAV RFNATISRYW NPSVTHVIAS TDEKGACTRT LKVLMGILNG KWIINAAWMK ASLKASQPVD EEPFEIQIDT QGCQDGPKTA RLRAETNKPK
601: LFEGLKFYFF GDFYKGYKED LQNLVKVAGG TILNTEDELG AESSNNVNDQ RSSSIVVYNI DPPHGCALGE EVTIIWQRAN DAEALASQTG SRLVGHTWVL
701: ESIAGYKLHP VIG

Arabidopsis Description

ATBARD1Breast cancer associated RING 1 [Source:UniProtKB/TrEMBL;Acc:A0A2H1ZEA6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.