Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 1
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G304600.1 | Wheat | nucleus, plastid | 88.68 | 93.88 |
| TraesCS1B01G315300.1 | Wheat | plastid | 86.72 | 91.68 |
| HORVU1Hr1G069020.11 | Barley | plastid | 62.73 | 72.96 |
| TraesCS2A01G139100.2 | Wheat | mitochondrion, plastid | 48.95 | 60.49 |
| OQU85242 | Sorghum | nucleus | 22.76 | 44.15 |
| Os05t0486600-01 | Rice | mitochondrion | 29.03 | 42.29 |
| Zm00001d017078_P002 | Maize | cytosol | 25.46 | 39.2 |
| VIT_07s0005g03940.t01 | Wine grape | plastid | 16.24 | 31.5 |
| KXG22233 | Sorghum | nucleus | 26.57 | 31.4 |
| Solyc09g066090.2.1 | Tomato | nucleus | 8.0 | 29.82 |
| GSMUA_Achr8P13610_001 | Banana | cytosol | 19.93 | 29.62 |
| Solyc05g016230.2.1 | Tomato | nucleus | 16.11 | 29.18 |
| Solyc12g042000.1.1 | Tomato | nucleus | 7.13 | 28.02 |
| Solyc09g066080.1.1 | Tomato | cytosol | 8.36 | 27.87 |
| Solyc12g041980.1.1 | Tomato | mitochondrion | 8.36 | 27.64 |
| CDY68257 | Canola | mitochondrion, plastid | 6.77 | 23.61 |
| TraesCS2A01G384900.1 | Wheat | nucleus | 17.47 | 23.01 |
| KRG95712 | Soybean | nucleus | 18.45 | 22.22 |
| KRH67433 | Soybean | nucleus | 17.96 | 21.53 |
| Solyc06g008210.2.1 | Tomato | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 17.96 | 20.8 |
| PGSC0003DMT400038153 | Potato | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 17.71 | 20.43 |
| CDY10084 | Canola | vacuole | 16.36 | 19.08 |
| AT1G04020.1 | Thale cress | nucleus | 16.36 | 18.65 |
| TraesCS1A01G329600.1 | Wheat | nucleus | 17.84 | 14.63 |
| Bra032532.1-P | Field mustard | nucleus | 16.36 | 11.78 |
| CDY32524 | Canola | cytosol | 15.01 | 11.15 |
Protein Annotations
| MapMan:14.3.1.1 | Gene3D:3.30.40.10 | Gene3D:3.40.50.10190 | InterPro:BRCA1-associated | InterPro:BRCT_dom | InterPro:BRCT_dom_sf |
| InterPro:EPHD | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006281 | GO:GO:0006950 | GO:GO:0006974 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | InterPro:IPR001357 | InterPro:IPR013083 | InterPro:IPR034732 |
| InterPro:IPR036420 | PFAM:PF00533 | PFAM:PF13771 | PFscan:PS50172 | PFscan:PS51805 | PANTHER:PTHR13763 |
| PANTHER:PTHR13763:SF6 | SMART:SM00292 | SUPFAM:SSF52113 | EnsemblPlantsGene:TraesCS1A01G304700 | EnsemblPlants:TraesCS1A01G304700.1 | InterPro:Znf_RING/FYVE/PHD |
| TIGR:cd00027 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr1A:-:497617283..497623131
Molecular Weight (calculated)
88484.7 Da
IEP (calculated)
4.966
GRAVY (calculated)
-0.538
Length
813 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSGSGAVVW REIASSPPPG FGRPTGSAGG TASGSERPSP APGFGAARPS SAQSGGSKSA ARTDMLVDVG MEAGSDNLEV PPHVGNESAS PTKGTKRKFV
101: VDATEGASPG VNTSNTGQHQ HSRRKGKGPG KHAKLEDNKG ATKLGRDQTP IGVFEDECVF CHSFRTSEPF HGPMVLYRNR RIVPSDEGNP TNAIYIHEKC
201: MVWAPKVESN GDTFKNVESE INRSKRLRCR RCKLRGAALG CYDNSCRKSY HVPCAMMIPE CRWDPENHRV WCPKHAPPDE LSSPTMESDT LSPVLQNHSS
301: QCPAKEISVD YQMEDEHINP LPCDEMSSPV IESDINSAVL QNHSSQCPTK EISVDCQMEE EHINPLPGDE MSSPIIETDI TSPVLQNHSS QCPAKEISVD
401: CQMEDEHINP LPGDEMSSPI IETDITSSVL QNHSSQCPAK EISVDCQMED EHINPLPGDE MSSPIIETDI TSAVLQNHSS QCPAKEISGD CQMENEHISP
501: LATSSSSLPG QVPGQYLVKG GTSVLDRRED LQVDQLNTSS SSLPQGQCSD RGRISANHRR EEKLVNQSST PVDQWVLLGI SLSASEKDSL KEFASLTSST
601: LAEEWDKTVT HVIVGRNAGD ACGRSYEVLM AILSGKWVVT AGWIVDCMVE PIPDLKTCLE KPIPGPEISY EMNFCDGSCT SGYGPTKGRA RAAERAPKLF
701: SGLHFCLSAY IDPEDRETIR RLVAAGGGQV LEGISPDRLH ENLNKNPAEV YFIYDSGPPR KITSDFDLIL GKEIQESIEY AKSGVQVISH TRLLDAILCY
801: DARILERRLQ QDV
101: VDATEGASPG VNTSNTGQHQ HSRRKGKGPG KHAKLEDNKG ATKLGRDQTP IGVFEDECVF CHSFRTSEPF HGPMVLYRNR RIVPSDEGNP TNAIYIHEKC
201: MVWAPKVESN GDTFKNVESE INRSKRLRCR RCKLRGAALG CYDNSCRKSY HVPCAMMIPE CRWDPENHRV WCPKHAPPDE LSSPTMESDT LSPVLQNHSS
301: QCPAKEISVD YQMEDEHINP LPCDEMSSPV IESDINSAVL QNHSSQCPTK EISVDCQMEE EHINPLPGDE MSSPIIETDI TSPVLQNHSS QCPAKEISVD
401: CQMEDEHINP LPGDEMSSPI IETDITSSVL QNHSSQCPAK EISVDCQMED EHINPLPGDE MSSPIIETDI TSAVLQNHSS QCPAKEISGD CQMENEHISP
501: LATSSSSLPG QVPGQYLVKG GTSVLDRRED LQVDQLNTSS SSLPQGQCSD RGRISANHRR EEKLVNQSST PVDQWVLLGI SLSASEKDSL KEFASLTSST
601: LAEEWDKTVT HVIVGRNAGD ACGRSYEVLM AILSGKWVVT AGWIVDCMVE PIPDLKTCLE KPIPGPEISY EMNFCDGSCT SGYGPTKGRA RAAERAPKLF
701: SGLHFCLSAY IDPEDRETIR RLVAAGGGQV LEGISPDRLH ENLNKNPAEV YFIYDSGPPR KITSDFDLIL GKEIQESIEY AKSGVQVISH TRLLDAILCY
801: DARILERRLQ QDV
001: MAEFTNMLMN PWVLHLQKLE LELKCPLCLK LLNRPVLLPC DHVFCDSCVH KSSQVESGCP VCKSKHPKKG KRDLRFMESV ISIYKSLNAA VSVHLPQLQI
101: PNDCNYKNDA LNNSNSPKHG ESEDSEMTDK DVSKRSGGTD SSSRDGSPLP TSEESDPRPK HQDWTEKQLS DHLLLYEFES EYDAANHTPE SYTEQAAKNV
201: RDITASEQPS NAARKRICGD SFIQESSPNP KTQDPTLLRL MESLRSDDPT DYVKAQNHQL PKSHTEQDSK RKRDITASDA MENHLKVPKR ENNLMQKSAD
301: IDCNGKCSAN SDDQLSEKIS KALEQTSSNI TICGFCQSAR VSEATGEMLH YSRGRPVDGD DIFRSNVIHV HSACIEWAPQ VYYEGDTVKN LKAELARGMK
401: IKCTKCSLKG AALGCFVKSC RRSYHVPCAR EISRCRWDYE DFLLLCPAHS SVKFPNEKSG HRVSRAEPLP KINPAELCSL EQTPAFTKEL VLCGSALSKS
501: DKKLMESLAV RFNATISRYW NPSVTHVIAS TDEKGACTRT LKVLMGILNG KWIINAAWMK ASLKASQPVD EEPFEIQIDT QGCQDGPKTA RLRAETNKPK
601: LFEGLKFYFF GDFYKGYKED LQNLVKVAGG TILNTEDELG AESSNNVNDQ RSSSIVVYNI DPPHGCALGE EVTIIWQRAN DAEALASQTG SRLVGHTWVL
701: ESIAGYKLHP VIG
101: PNDCNYKNDA LNNSNSPKHG ESEDSEMTDK DVSKRSGGTD SSSRDGSPLP TSEESDPRPK HQDWTEKQLS DHLLLYEFES EYDAANHTPE SYTEQAAKNV
201: RDITASEQPS NAARKRICGD SFIQESSPNP KTQDPTLLRL MESLRSDDPT DYVKAQNHQL PKSHTEQDSK RKRDITASDA MENHLKVPKR ENNLMQKSAD
301: IDCNGKCSAN SDDQLSEKIS KALEQTSSNI TICGFCQSAR VSEATGEMLH YSRGRPVDGD DIFRSNVIHV HSACIEWAPQ VYYEGDTVKN LKAELARGMK
401: IKCTKCSLKG AALGCFVKSC RRSYHVPCAR EISRCRWDYE DFLLLCPAHS SVKFPNEKSG HRVSRAEPLP KINPAELCSL EQTPAFTKEL VLCGSALSKS
501: DKKLMESLAV RFNATISRYW NPSVTHVIAS TDEKGACTRT LKVLMGILNG KWIINAAWMK ASLKASQPVD EEPFEIQIDT QGCQDGPKTA RLRAETNKPK
601: LFEGLKFYFF GDFYKGYKED LQNLVKVAGG TILNTEDELG AESSNNVNDQ RSSSIVVYNI DPPHGCALGE EVTIIWQRAN DAEALASQTG SRLVGHTWVL
701: ESIAGYKLHP VIG
Arabidopsis Description
ATBARD1Breast cancer associated RING 1 [Source:UniProtKB/TrEMBL;Acc:A0A2H1ZEA6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.