Factsheet for GSMUA_Achr4P20110_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 7
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P03070_001
GSMUA_Achr1P15330_001
GSMUA_Achr1P23560_001
GSMUA_Achr3P00510_001
GSMUA_Achr3P05670_001
GSMUA_Achr3P09020_001
GSMUA_Achr3P12980_001
GSMUA_Achr3P27880_001
GSMUA_Achr4P20110_001
GSMUA_Achr4P20600_001
GSMUA_Achr4P30000_001
GSMUA_Achr5P04870_001
GSMUA_Achr5P20630_001
GSMUA_Achr5P21910_001
GSMUA_Achr6P03810_001
GSMUA_Achr6P29980_001
GSMUA_Achr7P05510_001
GSMUA_Achr7P15930_001
GSMUA_Achr8P11400_001
GSMUA_Achr9P17590_001
GSMUA_Achr9P22950_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G04020.1	GSMUA_Achr3P09020_001	AT1G18040.1	21798944
AT4G04020.1	GSMUA_Achr9P17590_001	AT1G18040.1	21798944
AT4G04020.1	GSMUA_Achr10P...	AT2G24570.1	21798944
AT4G04020.1	GSMUA_Achr1P23560_001	AT2G24570.1	21798944
AT4G04020.1	GSMUA_Achr3P00510_001	AT2G24570.1	21798944
AT4G04020.1	GSMUA_Achr3P05670_001	AT2G24570.1	21798944
AT4G04020.1	GSMUA_Achr3P27880_001	AT2G24570.1	21798944
AT4G04020.1	GSMUA_Achr4P20600_001	AT2G24570.1	21798944
AT4G04020.1	GSMUA_Achr5P04870_001	AT2G24570.1	21798944
AT4G04020.1	GSMUA_Achr5P21910_001	AT2G24570.1	21798944
AT4G04020.1	GSMUA_Achr6P03810_001	AT2G24570.1	21798944
AT4G04020.1	GSMUA_Achr7P15930_001	AT2G24570.1	21798944
AT4G04020.1	GSMUA_Achr9P22950_001	AT2G24570.1	21798944
AT4G04020.1	GSMUA_Achr3P12980_001	AT4G04020.1	21798944
AT4G04020.1	GSMUA_Achr4P20110_001	AT4G04020.1	21798944
AT4G04020.1	GSMUA_Achr7P05510_001	AT4G04020.1	21798944
AT4G04020.1	GSMUA_Achr6P29980_001	AT4G21070.1	16957774
AT4G04020.1	GSMUA_Achr3P12980_001	AT4G22240.1	24937144
AT4G04020.1	GSMUA_Achr4P20110_001	AT4G22240.1	24937144
AT4G04020.1	GSMUA_Achr7P05510_001	AT4G22240.1	24937144
AT4G04020.1	GSMUA_Achr11P...	AT5G22890.1	21798944
AT4G04020.1	GSMUA_Achr1P15330_001	AT5G22890.1	21798944
AT4G22240.1	GSMUA_Achr11P...	AT3G61310.1	21798944
AT4G22240.1	GSMUA_Achr11P...	AT3G61310.1	21798944
AT4G22240.1	GSMUA_Achr1P03070_001	AT3G61310.1	21798944
AT4G22240.1	GSMUA_Achr4P30000_001	AT3G61310.1	21798944
AT4G22240.1	GSMUA_Achr5P20630_001	AT3G61310.1	21798944
AT4G22240.1	GSMUA_Achr8P11400_001	AT3G61310.1	21798944
AT4G22240.1	GSMUA_Achr3P12980_001	AT4G04020.1	24937144
AT4G22240.1	GSMUA_Achr4P20110_001	AT4G04020.1	24937144
AT4G22240.1	GSMUA_Achr7P05510_001	AT4G04020.1	24937144
AT4G22240.1	GSMUA_Achr3P12980_001	AT4G22240.1	24937144
AT4G22240.1	GSMUA_Achr4P20110_001	AT4G22240.1	24937144
AT4G22240.1	GSMUA_Achr7P05510_001	AT4G22240.1	24937144
AT4G22240.1	GSMUA_Achr11P...	ATCG00810.1	24937144

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P05510_001	Banana	cytosol	61.86	77.51
GSMUA_Achr3P12980_001	Banana	plastid	68.59	66.88
KRH11500	Soybean	plastid	58.65	59.8
KRH36517	Soybean	plastid	59.29	59.29
TraesCS5B01G162100.1	Wheat	plastid	58.01	58.01
CDY71809	Canola	plastid	34.94	57.98
TraesCS5A01G164600.1	Wheat	plastid	57.37	57.01
Os09t0133600-01	Rice	plastid	57.37	56.11
Zm00001d025574_P001	Maize	extracellular	53.53	53.18
Zm00001d003470_P001	Maize	plastid	54.17	53.14
PGSC0003DMT400043112	Potato	extracellular	55.45	53.07
Solyc02g081170.2.1	Tomato	plastid	54.81	52.45
EES12270	Sorghum	plastid	55.45	52.42
CDX82925	Canola	plastid	52.88	52.05
CDX79139	Canola	plastid	51.6	50.47
AT4G04020.1	Thale cress	plastid	51.28	50.31
Bra013602.1-P	Field mustard	plastid	51.28	50.16
CDY16684	Canola	plastid	50.96	50.0
Bra029481.1-P	Field mustard	plastid	50.96	50.0
AT4G22240.1	Thale cress	plastid	49.36	49.68
CDY21291	Canola	plastid	49.36	48.73
CDX90850	Canola	plastid	49.04	48.42
HORVU0Hr1G012460.1	Barley	cytosol, mitochondrion, nucleus	55.77	46.65
Bra000785.1-P	Field mustard	plastid	48.4	46.18
CDX94540	Canola	plastid	16.67	34.9
GSMUA_Achr6P01070_001	Banana	plastid	36.86	29.95
GSMUA_Achr2P09810_001	Banana	plastid	21.79	25.56

Protein Annotations

EnsemblPlants:GSMUA_Achr4P20110_001	EnsemblPlants:GSMUA_Achr4T20110_001	EnsemblPlantsGene:GSMUA_Achr4G20110_001	InterPro:PAP/fibrillin_dom	PANTHER:PTHR31906	PANTHER:PTHR31906:SF7
PFAM:PF04755	SEG:seg	UniParc:UPI0002952675	UniProt:M0SQH4	MapMan:35.1	:

Description

Probable plastid-lipid-associated protein 2, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr4G20110_001]

Coordinates

chr4:-:20844952..20846939

Molecular Weight (calculated)

33537.5 Da

IEP (calculated)

5.228

GRAVY (calculated)

0.053

Length

312 amino acids

Sequence
(BLAST)

001: MAAVASWKPM ALKAPPAAVA TAVPRRNLVP TGLIHMKVPI LRSTGRHLLS RAPILSRAVV DDDEQGEEGG EEPLGGVAVT ELLVAASEVS DLKKKLMDLV
101: SGTDWGLKTS SETRAEIVEL IGQIEAKNPT PAPTDALTLL DGKWILAYTS FSALFPLLAS GRLPSLVKVD EISQSFDSES FTVQNSVKLL GPLATTSVTT
201: SAKFEVRSPK RVQIKFEEGI IGTPQLTDNI VIPDKVEFLG QSLDLSLLDG VFKSIQNAAS SVVRTISGRP PLKIPINNAL QSWLLTTYLD EELRISRDYA
301: GSVFVLTKAN DP

Best Arabidopsis Sequence Match ( AT4G22240.1 )
(BLAST)

001: MATVQLSTQF SCQTRVSISP NSKSISKPPF LVPVTSIIHR PMISTGGIAV SPRRVFKVRA TDTGEIGSAL LAAEEAIEDV EETERLKRSL VDSLYGTDRG
101: LSASSETRAE IGDLITQLES KNPTPAPTEA LFLLNGKWIL AYTSFVNLFP LLSRGIVPLI KVDEISQTID SDNFTVQNSV RFAGPLGTNS ISTNAKFEIR
201: SPKRVQIKFE QGVIGTPQLT DSIEIPEYVE VLGQKIDLNP IRGLLTSVQD TASSVARTIS SQPPLKFSLP ADNAQSWLLT TYLDKDIRIS RGDGGSVFVL
301: IKEGSPLLNP

Arabidopsis Description

PAP2Probable plastid-lipid-associated protein 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O49629]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.