Factsheet for Bra000785.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000785.1-P
Bra002437.1-P
Bra002438.1-P
Bra002766.1-P
Bra013602.1-P
Bra016572.1-P
Bra020223.1-P
Bra020224.1-P
Bra020883.1-P
Bra029481.1-P
Bra031013.1-P
Bra032084.1-P
Bra037622.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G04020.1	Bra016572.1-P	AT1G18040.1	21798944
AT4G04020.1	Bra031013.1-P	AT1G18040.1	21798944
AT4G04020.1	Bra032084.1-P	AT2G24570.1	21798944
AT4G04020.1	Bra000785.1-P	AT4G04020.1	21798944
AT4G04020.1	Bra029481.1-P	AT4G04020.1	21798944
AT4G04020.1	Bra020883.1-P	AT4G21070.1	16957774
AT4G04020.1	Bra037622.1-P	AT4G21070.1	16957774
AT4G04020.1	Bra013602.1-P	AT4G22240.1	24937144
AT4G04020.1	Bra002437.1-P	AT5G22890.1	21798944
AT4G04020.1	Bra002438.1-P	AT5G22890.1	21798944
AT4G04020.1	Bra020223.1-P	AT5G22890.1	21798944
AT4G04020.1	Bra020224.1-P	AT5G22890.1	21798944
AT4G04020.1	Bra002766.1-P	AT5G57050.1	16571665

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90850	Canola	plastid	92.05	95.25
CDY21291	Canola	plastid	90.83	93.99
Bra029481.1-P	Field mustard	plastid	79.82	82.08
AT4G04020.1	Thale cress	plastid	78.59	80.82
Bra013602.1-P	Field mustard	plastid	70.03	71.79
GSMUA_Achr7P05510_001	Banana	cytosol	51.07	67.07
KRH11500	Soybean	plastid	58.72	62.75
PGSC0003DMT400043112	Potato	extracellular	61.16	61.35
Solyc02g081170.2.1	Tomato	plastid	60.55	60.74
KRH36517	Soybean	plastid	57.8	60.58
TraesCS5B01G162100.1	Wheat	plastid	53.52	56.09
TraesCS5A01G164600.1	Wheat	plastid	53.52	55.73
GSMUA_Achr3P12980_001	Banana	plastid	54.43	55.62
Os09t0133600-01	Rice	plastid	53.21	54.55
Zm00001d003470_P001	Maize	plastid	51.38	52.83
Zm00001d025574_P001	Maize	extracellular	50.15	52.23
EES12270	Sorghum	plastid	51.99	51.52
GSMUA_Achr4P20110_001	Banana	plastid	46.18	48.4
HORVU0Hr1G012460.1	Barley	cytosol, mitochondrion, nucleus	51.68	45.31
Bra005337.1-P	Field mustard	plastid	40.37	36.67

Protein Annotations

EnsemblPlants:Bra000785.1	EnsemblPlants:Bra000785.1-P	EnsemblPlantsGene:Bra000785	InterPro:PAP/fibrillin_dom	PANTHER:PTHR31906	PANTHER:PTHR31906:SF7
PFAM:PF04755	SEG:seg	UniParc:UPI00000AB5E7	UniProt:M4C9A6	MapMan:35.1	:

Description

AT4G04020 (E=1e-129) FIB | FIB (FIBRILLIN); structural molecule

Coordinates

chrA03:+:13097470..13098888

Molecular Weight (calculated)

35646.2 Da

IEP (calculated)

5.098

GRAVY (calculated)

-0.222

Length

327 amino acids

Sequence
(BLAST)

001: MATTVPLFSQ FTCKTPITSS STSSFQSKSP ILLPINPINR RIAVHRHDFK VRASDVNDEW GPDSKGRGGD VDDEWGPEIG LNSSVAEKVA EEAIESAEET
101: ERLKRVLAGS LYGTDRGLSA SSETRAEISE LITQLESKNP NPAPNEALFL LNGKWILVYT SFVGLFPLLS RRISPLVKVD EISQTIDSDS FTVHNSVRFA
201: SPLATTSLST NAKFEVRSPK RVQVKFEQGV IGTPQLTDSI EIPEFVEVLG QKIDLNPIKG LLTSVQDTAS SVARTISSQP PLKFSLPGDS AQSWLLTTYL
301: DKDLRISRGD GGSVFVLIRE GSSLLNP

Best Arabidopsis Sequence Match ( AT4G04020.1 )
(BLAST)

001: MATVPLFTQF PCKTLNPSSS NTKHQSKSPI LLPINSINRR SEIGVSVHRP DFKIRATDID DEWGQDGVER VFASSSTVSV ADKAIESVEE TERLKRSLAD
101: SLYGTDRGLS VSSDTRAEIS ELITQLESKN PTPAPNEALF LLNGKWILAY TSFVGLFPLL SRRIEPLVKV DEISQTIDSD SFTVQNSVRF AGPFSTTSFS
201: TNAKFEIRSP KRVQIKFEQG VIGTPQLTDS IEIPESVEVL GQKIDLNPIK GLLTSVQDTA SSVARTISNQ PPLKFSLPSD NTQSWLLTTY LDKDLRISRG
301: DGGSVYVLIK EGSSLLNP

Arabidopsis Description

PAP1Probable plastid-lipid-associated protein 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O81439]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.