CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91819
KRH11500
KRH23958
KRH34962
KRH36517
KRH39841

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G55220.1	KRG91819	AT1G34430.1	21798944
AT5G55220.1	KRH34962	AT1G34430.1	21798944
AT5G55220.1	KRH11500	AT4G04020.1	21798944
AT5G55220.1	KRH36517	AT4G04020.1	21798944
AT5G55220.1	KRH23958	AT4G25200.1	21798944
AT5G55220.1	KRH39841	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH14319	Soybean	plastid	91.88	91.38
KRH26213	Soybean	cytosol, extracellular, nucleus, plastid	16.24	75.86
VIT_19s0090g01210.t01	Wine grape	plastid	68.45	69.22
Solyc07g064950.2.1	Tomato	nucleus, plastid	64.58	66.41
PGSC0003DMT400057431	Potato	plastid	65.68	65.2
KRH14348	Soybean	endoplasmic reticulum, extracellular, plasma membrane	29.52	61.07
CDY20778	Canola	plastid	61.07	60.73
Bra035563.1-P	Field mustard	plastid	60.89	60.55
CDY06597	Canola	plastid	61.07	60.4
AT5G55220.1	Thale cress	plastid	59.78	59.23
Bra002923.1-P	Field mustard	cytosol, nucleus, plastid	6.64	59.02
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane	59.41	56.49
Os06t0308000-01	Rice	plastid	52.21	52.7
HORVU7Hr1G045680.1	Barley	plastid	50.74	52.28
TraesCS7B01G129300.1	Wheat	plastid	50.55	52.09
TraesCS7D01G224400.1	Wheat	plastid	50.55	52.09
TraesCS7A01G222800.1	Wheat	plastid	50.37	51.9
EES16569	Sorghum	plastid	49.63	51.24
Zm00001d023292_P001	Maize	plastid	49.63	50.95
CDY19904	Canola	plastid	13.84	46.3
CDY19903	Canola	extracellular	11.44	44.29
CDY17312	Canola	endoplasmic reticulum	27.86	39.43
Zm00001d000318_P001	Maize	peroxisome	15.68	29.93
Zm00001d047056_P001	Maize	plastid	17.34	27.98
Zm00001d013704_P001	Maize	plastid	9.78	23.56

Protein Annotations

Gene3D:1.10.3120.10	EntrezGene:100805543	MapMan:18.12.3	Gene3D:3.10.50.40	Gene3D:3.30.70.1050	EMBL:ACUP02001288
ncoils:Coil	EnsemblPlantsGene:GLYMA_02G294900	GO:GO:0006457	GO:GO:0006810	GO:GO:0008150	GO:GO:0009987
GO:GO:0015031	UniProt:I1JJE0	InterPro:IPR036611	InterPro:IPR037041	EnsemblPlants:KRH73811	ProteinID:KRH73811
ProteinID:KRH73811.1	HAMAP:MF_00303	PFAM:PF05697	PFAM:PF05698	PANTHER:PTHR30560	PANTHER:PTHR30560:SF3
SUPFAM:SSF102735	SUPFAM:SSF109998	SUPFAM:SSF54534	InterPro:Trig_fac	InterPro:Trigger_fac_C	InterPro:Trigger_fac_C_sf
InterPro:Trigger_fac_ribosome-bd_bac	InterPro:Trigger_fac_ribosome-bd_sf	InterPro:Trigger_fact/SurA_dom_sf	UniParc:UPI000233746C	SEG:seg	:

Description

hypothetical protein

Coordinates

chr2:+:47300149..47306133

Molecular Weight (calculated)

61154.6 Da

IEP (calculated)

4.837

GRAVY (calculated)

-0.339

Length

542 amino acids

Sequence
(BLAST)

001: MELCTRTFTS FLLFNPSFSP NSVFLRANPN ATTPLKFNSL KLSSFSPHVH LFQPFLSPHI SSPFTLSAAA SASSSSVAVG TEQDRLPAEL KVTETEEPNS
101: RVRLHVEVPS LVCEDCYKRV ITEFMKQAKI PGFRPGKKVP ENILISYVGS QNVQKATIES ILRRTLSHAM TSVTGRALQD SVQIVTKFSE MEETYSSLGS
201: LRYDVLVDIA PEIKWIPDNN AYKNLKIVVE IDSDIDAHRA SEQEFRRRYK SIGALKVVID RGLQVGDVAV LDISATTIDQ DESNVKSIPS AESKGFNFDT
301: EYGEQVLPGF LDSIIGIQRG ESKSFPLVFP ETWKQENLHG VHAQFTVECK ELFYRDLPEL DDSIADKLLP ECTTVEQVKD LLLQKCLEVE QTAREQATDN
401: AILDQISKIV EVDIPKSLFE EQGRQLYGAN LLEIQAKMKL NEQQLATLSS SKAVNEFLEH QKENITNLIK QSLAVGDIYK RENLQFATED LVKEVENSIA
501: EFKRQNQEYD EERVKGQVQE ILEGAKVLEW LREHAEVQYI TK

Best Arabidopsis Sequence Match ( AT5G55220.1 )
(BLAST)

001: MELCVISTTT TVKAINPFLP SITRRVSSRL FQSDSVLQFG GRLKKPISRP LDMSCVSRKI GFFGDFMSHG GNFRLFAAAS PAVETSVKED KLPADLKVTE
101: TVQANSSVKL SVEVPEIVCE DCYQRVLTEF MKLSKVPGFR PKTRVPENII VGFVGRQYVL RATVESILKR TLPHAMESVT GRALKDSIQI VSSFPDMEKA
201: YSKLKTLSYE VVVDVVPELK WNPEDGYKNM KVVVELGDEI DAKKACERQL RQKYKSLGAL KIVTERGLQV GDLAVVDISA TTIDEDGSTG QAIPDAESKG
301: FHFDTEEGNR LLPGFLDAII GIRAGESKSF TLVFPESWKQ ESLRGQRAQF TVDCKELFYR DLPTLDDSLA DKLLPGCTTL KEVEETLAKR CQEMEQEAKE
401: QATDNAILEQ IRKMVEVEIP QSLFEEQGRQ FYGARLLEIQ GNMKLNEDQL ASLSSQKAVN EFLETQRESI TNIIKQNIAV GDIFKRENLE FSTDELVKEV
501: ENSISEFKKH KQEFDEERVK DQVQEILEGA KVLEWLKDRA EIQYITR

Arabidopsis Description

TIGTrigger factor-like protein TIG, Chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8S9L5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.