CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX89437
CDX90850
CDX94540
CDY03145
CDY03368
CDY12039
CDY16684
CDY21291
CDY71809

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G55220.1	CDY03145	AT1G34430.1	21798944
AT5G55220.1	CDY12039	AT1G34430.1	21798944
AT5G55220.1	CDX90850	AT4G04020.1	21798944
AT5G55220.1	CDX94540	AT4G04020.1	21798944
AT5G55220.1	CDY16684	AT4G04020.1	21798944
AT5G55220.1	CDY21291	AT4G04020.1	21798944
AT5G55220.1	CDY71809	AT4G04020.1	21798944
AT5G55220.1	CDX89437	AT4G25200.1	21798944
AT5G55220.1	CDY03368	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra035563.1-P	Field mustard	plastid	99.82	99.82
CDY06597	Canola	plastid	93.76	93.25
AT5G55220.1	Thale cress	plastid	81.28	80.99
CDY19904	Canola	plastid	20.18	67.9
Solyc07g064950.2.1	Tomato	nucleus, plastid	59.45	61.48
KRH73811	Soybean	plastid	60.73	61.07
VIT_19s0090g01210.t01	Wine grape	plastid	59.27	60.26
PGSC0003DMT400057431	Potato	plastid	60.0	59.89
KRH14319	Soybean	plastid	59.63	59.63
CDY19903	Canola	extracellular	14.86	57.86
KRH26213	Soybean	cytosol, extracellular, nucleus, plastid	11.74	55.17
HORVU7Hr1G045680.1	Barley	plastid	51.38	53.23
TraesCS7D01G224400.1	Wheat	plastid	51.01	52.85
TraesCS7B01G129300.1	Wheat	plastid	50.83	52.66
TraesCS7A01G222800.1	Wheat	plastid	50.64	52.47
Os06t0308000-01	Rice	plastid	51.01	51.77
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane	54.13	51.75
Zm00001d023292_P001	Maize	plastid	50.09	51.7
CDY17312	Canola	endoplasmic reticulum	35.78	50.91
EES16569	Sorghum	plastid	48.99	50.86
KRH14348	Soybean	endoplasmic reticulum, extracellular, plasma membrane	19.08	39.69
Zm00001d000318_P001	Maize	peroxisome	15.05	28.87
Zm00001d047056_P001	Maize	plastid	16.33	26.49
Zm00001d013704_P001	Maize	plastid	8.99	21.78

Protein Annotations

Gene3D:1.10.3120.10	MapMan:18.12.3	Gene3D:3.10.50.40	Gene3D:3.30.70.1050	GO:A0A078G7Z8	UniProt:A0A078G7Z8
EnsemblPlants:CDY20778	ProteinID:CDY20778	ProteinID:CDY20778.1	ncoils:Coil	GO:GO:0000413	GO:GO:0003674
GO:GO:0003755	GO:GO:0003824	GO:GO:0006457	GO:GO:0006464	GO:GO:0006810	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0015031	GO:GO:0016853	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00013010001
InterPro:IPR001179	InterPro:IPR036611	InterPro:IPR037041	HAMAP:MF_00303	PFAM:PF05697	PFAM:PF05698
InterPro:PPIase_FKBP_dom	PFscan:PS50059	PANTHER:PTHR30560	PANTHER:PTHR30560:SF3	SUPFAM:SSF102735	SUPFAM:SSF109998
SUPFAM:SSF54534	TIGRFAMs:TIGR00115	InterPro:Trig_fac	InterPro:Trigger_fac_C	InterPro:Trigger_fac_C_sf	InterPro:Trigger_fac_ribosome-bd_bac
InterPro:Trigger_fac_ribosome-bd_sf	InterPro:Trigger_fact/SurA_dom_sf	UniParc:UPI0004EEAD6D	SEG:seg	:	:

Description

BnaA02g09180DPeptidylprolyl isomerase [Source:UniProtKB/TrEMBL;Acc:A0A078G7Z8]

Coordinates

chrLK032111:-:561517..564327

Molecular Weight (calculated)

61102.2 Da

IEP (calculated)

4.945

GRAVY (calculated)

-0.396

Length

545 amino acids

Sequence
(BLAST)

001: MELCVISSIN PFHSSSTRRL FQSDSLFLSR DGCSLLRFNG RLLKKPIKPL ELSCAAKKIG SGGGGVRRSA ASTKAAPAVE PSVKEDKLPA ELQVKETPAP
101: NSSVKLSVEV PAVVCEDCYQ RVLTEFMKMA KVPGFRPGKR VPENIIVGFV GRPYVLRATV ESILKRTLPH AMESVTGKAL KDSIQIVSSF PEMEKAYSQL
201: KTLSYEVVVD VVPELKWNPE NGYKDMKVVV ELGDEIDAKK ACERQLRQKY KSLGALKIVT DRGLEVGDLA VIDISATTID EDGSTGEAIP DAESKGFHFD
301: TEEGNRLLPG FLDSILGIKA GESKSFSLVF PESWKQETLR GQRAQFTVDC KELFYRDLPT LDDSLADKLL PGCTTLKEVE ETLTKRCQEM EEEAKEQATD
401: NAILEQIRKM VEVEIPQSLF EEQGRQFYGA RLLEIQASGN MKLTEDQLAS LSSQKSVNEF LETQRESITN IIKQNLAVGD IFKRENLEFS TDELVKEVEN
501: SVTEFKKHKQ EYDEERVKDQ VQEILEGAKV LEWLKERAEI QYIIR

Best Arabidopsis Sequence Match ( AT5G55220.1 )
(BLAST)

001: MELCVISTTT TVKAINPFLP SITRRVSSRL FQSDSVLQFG GRLKKPISRP LDMSCVSRKI GFFGDFMSHG GNFRLFAAAS PAVETSVKED KLPADLKVTE
101: TVQANSSVKL SVEVPEIVCE DCYQRVLTEF MKLSKVPGFR PKTRVPENII VGFVGRQYVL RATVESILKR TLPHAMESVT GRALKDSIQI VSSFPDMEKA
201: YSKLKTLSYE VVVDVVPELK WNPEDGYKNM KVVVELGDEI DAKKACERQL RQKYKSLGAL KIVTERGLQV GDLAVVDISA TTIDEDGSTG QAIPDAESKG
301: FHFDTEEGNR LLPGFLDAII GIRAGESKSF TLVFPESWKQ ESLRGQRAQF TVDCKELFYR DLPTLDDSLA DKLLPGCTTL KEVEETLAKR CQEMEQEAKE
401: QATDNAILEQ IRKMVEVEIP QSLFEEQGRQ FYGARLLEIQ GNMKLNEDQL ASLSSQKAVN EFLETQRESI TNIIKQNIAV GDIFKRENLE FSTDELVKEV
501: ENSISEFKKH KQEFDEERVK DQVQEILEGA KVLEWLKDRA EIQYITR

Arabidopsis Description

TIGTrigger factor-like protein TIG, Chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8S9L5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.