Factsheet for VIT_19s0090g01210.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2
cytosol 1
nucleus 1
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_16s0022g00510.t01
VIT_18s0072g01000.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G55220.1	VIT_18s0072g01000.t01	AT1G34430.1	21798944
AT5G55220.1	VIT_16s0022g00510.t01	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH73811	Soybean	plastid	69.22	68.45
KRH14319	Soybean	plastid	69.59	68.44
Solyc07g064950.2.1	Tomato	nucleus, plastid	65.67	66.79
PGSC0003DMT400057431	Potato	plastid	66.42	65.2
KRH26213	Soybean	cytosol, extracellular, nucleus, plastid	13.62	62.93
Bra002923.1-P	Field mustard	cytosol, nucleus, plastid	7.09	62.3
AT5G55220.1	Thale cress	plastid	62.5	61.24
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane	64.74	60.88
CDY06597	Canola	plastid	61.75	60.4
CDY20778	Canola	plastid	60.26	59.27
Bra035563.1-P	Field mustard	plastid	60.07	59.08
Os06t0308000-01	Rice	plastid	57.84	57.73
HORVU7Hr1G045680.1	Barley	plastid	55.97	57.03
TraesCS7D01G224400.1	Wheat	plastid	55.6	56.65
TraesCS7B01G129300.1	Wheat	plastid	55.6	56.65
TraesCS7A01G222800.1	Wheat	plastid	55.41	56.46
Zm00001d023292_P001	Maize	plastid	55.22	56.06
EES16569	Sorghum	plastid	54.66	55.81
CDY19903	Canola	extracellular	12.69	48.57
KRH14348	Soybean	endoplasmic reticulum, extracellular, plasma membrane	23.69	48.47
CDY19904	Canola	plastid	13.81	45.68
CDY17312	Canola	endoplasmic reticulum	29.1	40.73
Zm00001d000318_P001	Maize	peroxisome	17.16	32.39
Zm00001d047056_P001	Maize	plastid	18.66	29.76
Zm00001d013704_P001	Maize	plastid	10.07	24.0

Protein Annotations

Gene3D:1.10.3120.10	EntrezGene:100243475	wikigene:100243475	MapMan:18.12.3	Gene3D:3.10.50.40	Gene3D:3.30.70.1050
ProteinID:CBI26697	ProteinID:CBI26697.3	ncoils:Coil	UniProt:D7T838	EMBL:FN595751	GO:GO:0006457
GO:GO:0006810	GO:GO:0008150	GO:GO:0009987	GO:GO:0015031	InterPro:IPR036611	InterPro:IPR037041
EntrezGene:LOC100243475	wikigene:LOC100243475	HAMAP:MF_00303	PFAM:PF05697	PFAM:PF05698	PANTHER:PTHR30560
PANTHER:PTHR30560:SF3	SUPFAM:SSF102735	SUPFAM:SSF109998	SUPFAM:SSF54534	TIGR:TC56395	TIGRFAMs:TIGR00115
InterPro:Trig_fac	InterPro:Trigger_fac_C	InterPro:Trigger_fac_C_sf	InterPro:Trigger_fac_ribosome-bd_bac	InterPro:Trigger_fac_ribosome-bd_sf	InterPro:Trigger_fact/SurA_dom_sf
UniParc:UPI00015C770B	ArrayExpress:VIT_19s0090g01210	EnsemblPlantsGene:VIT_19s0090g01210	EnsemblPlants:VIT_19s0090g01210.t01	unigene:Vvi.9563	RefSeq:XP_002277545
RefSeq:XP_002277545.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr19:+:7248621..7255438

Molecular Weight (calculated)

61203.0 Da

IEP (calculated)

5.583

GRAVY (calculated)

-0.460

Length

536 amino acids

Sequence
(BLAST)

001: MELYFSTTLL KFRPPLSLLS PITSLSLTTP LLLQPKKNPS NLHTLSYSRQ FFHPQHPSHR NSIHFTAFSS PASVASAKDR LPADVEVTET EEPNSRVRLS
101: VEVPAVVCED CYQRVIREFT KLAKIPGFRP GKKVPETVLI NHIGKKNVQK ATIESILKRT FPHAMSSVAG RALNDSIRIV TKFSDMEETY SSQKFLRYDI
201: IVDVAPEVKW VPENGYKNLK IVVEIDSDID AQRASEQELK RRYKSLGLLR IITDRGLQIG DVVVLDISAT TIDQDESNVQ KIPSAESKGF HFDTEDGDKV
301: LPGFLDSIIG IRQGETKSFP LVFPESWRQE NLRGVHAQFT VECKELFYRE LPELNDSLAE KLLPGCTTLE QVKESLLQRC LEVEQTAKEQ ATDNAILDQL
401: HKMIEVDIPQ SLFEEQGRQL YGAQLLQIQA NMKLNEQQLA SLSSPKAVNE YLESQKENIT SVIKQNLAVG DIFRRENLQF PTEELVKEVE NSISEFKRHK
501: QEYDEERIRE QVQEVLEGAK VLEWLKEHAE IEYKTR

Best Arabidopsis Sequence Match ( AT5G55220.1 )
(BLAST)

001: MELCVISTTT TVKAINPFLP SITRRVSSRL FQSDSVLQFG GRLKKPISRP LDMSCVSRKI GFFGDFMSHG GNFRLFAAAS PAVETSVKED KLPADLKVTE
101: TVQANSSVKL SVEVPEIVCE DCYQRVLTEF MKLSKVPGFR PKTRVPENII VGFVGRQYVL RATVESILKR TLPHAMESVT GRALKDSIQI VSSFPDMEKA
201: YSKLKTLSYE VVVDVVPELK WNPEDGYKNM KVVVELGDEI DAKKACERQL RQKYKSLGAL KIVTERGLQV GDLAVVDISA TTIDEDGSTG QAIPDAESKG
301: FHFDTEEGNR LLPGFLDAII GIRAGESKSF TLVFPESWKQ ESLRGQRAQF TVDCKELFYR DLPTLDDSLA DKLLPGCTTL KEVEETLAKR CQEMEQEAKE
401: QATDNAILEQ IRKMVEVEIP QSLFEEQGRQ FYGARLLEIQ GNMKLNEDQL ASLSSQKAVN EFLETQRESI TNIIKQNIAV GDIFKRENLE FSTDELVKEV
501: ENSISEFKKH KQEFDEERVK DQVQEILEGA KVLEWLKDRA EIQYITR

Arabidopsis Description

TIGTrigger factor-like protein TIG, Chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8S9L5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.