Factsheet for Zm00001d000318_P001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

plastid 1
peroxisome 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid
iPSORT:	plastid
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003470_P001
Zm00001d023606_P005
Zm00001d025574_P001
Zm00001d041839_P001
Zm00001d044874_P001
Zm00001d052194_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G55220.1	Zm00001d023606_P005	AT1G34430.1	21798944
AT5G55220.1	Zm00001d041839_P001	AT1G34430.1	21798944
AT5G55220.1	Zm00001d003470_P001	AT4G04020.1	21798944
AT5G55220.1	Zm00001d025574_P001	AT4G04020.1	21798944
AT5G55220.1	Zm00001d044874_P001	AT4G25200.1	21798944
AT5G55220.1	Zm00001d052194_P001	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d047056_P001	Maize	plastid	69.72	58.93
Zm00001d013704_P001	Maize	plastid	32.04	40.44
Zm00001d023292_P001	Maize	plastid	53.87	28.98
EES16569	Sorghum	plastid	51.06	27.62
KRH14348	Soybean	endoplasmic reticulum, extracellular, plasma membrane	23.94	25.95
Os06t0308000-01	Rice	plastid	48.24	25.51
HORVU7Hr1G045680.1	Barley	plastid	45.77	24.71
TraesCS7D01G224400.1	Wheat	plastid	45.42	24.52
TraesCS7B01G129300.1	Wheat	plastid	45.42	24.52
TraesCS7A01G222800.1	Wheat	plastid	45.42	24.52
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane	37.32	18.6
VIT_19s0090g01210.t01	Wine grape	plastid	32.39	17.16
Solyc07g064950.2.1	Tomato	nucleus, plastid	30.99	16.7
CDY19904	Canola	plastid	9.51	16.67
PGSC0003DMT400057431	Potato	plastid	31.69	16.48
AT5G55220.1	Thale cress	plastid	30.28	15.72
KRH73811	Soybean	plastid	29.93	15.68
KRH14319	Soybean	plastid	29.93	15.6
CDY20778	Canola	plastid	28.87	15.05
CDY06597	Canola	plastid	28.87	14.96
Bra035563.1-P	Field mustard	plastid	28.52	14.86
CDY17312	Canola	endoplasmic reticulum	13.73	10.18
CDY19903	Canola	extracellular	3.87	7.86
KRH26213	Soybean	cytosol, extracellular, nucleus, plastid	3.17	7.76
Bra002923.1-P	Field mustard	cytosol, nucleus, plastid	0.0	0.0

Protein Annotations

EnsemblPlants:Zm00001d000318_P001	EnsemblPlants:Zm00001d000318_T001	EnsemblPlantsGene:Zm00001d000318	Gene3D:3.30.70.1050	GO:GO:0006457	GO:GO:0006810
GO:GO:0008150	GO:GO:0009987	GO:GO:0015031	InterPro:IPR036611	InterPro:Trig_fac	InterPro:Trigger_fac_ribosome-bd_bac
InterPro:Trigger_fac_ribosome-bd_sf	PANTHER:PTHR30560	PANTHER:PTHR30560:SF3	PFAM:PF05697	SEG:seg	SUPFAM:SSF102735
UniParc:UPI000843E951	UniProt:A0A1X7YHP9	MapMan:18.12.3	:	:	:

Description

Trigger factor-like protein TIG Chloroplastic

Coordinates

chrB73V4_ctg54:-:31034..33599

Molecular Weight (calculated)

32094.9 Da

IEP (calculated)

7.951

GRAVY (calculated)

-0.161

Length

284 amino acids

Sequence
(BLAST)

001: MATNPSNGAG TDVPAAPAAV KFSVEVPTSI IHECYQSTLQ EYAKRVKVPG FWPGKTIPEN VLINYVGPQH VEERALEDSV RILTQFDDMR NSFSLDNVFR
101: YDVVVDVAPE VRWLSEDKYK NLKVVEIDEA VDAEKAAEKE LQRRHKALGL LRIVADRVIL SSSHVVASRH KLPTSCDSDL LCLTSSRNAQ LRWPRAPMRL
201: YRSSCCPCGG SAAQPPGPPP LQPHSFYNHI MFICRYMLDA EVQKPLLSVF PMMNGFRMNE ELPWLCLKTF QKPSMLFFVL ICKI

Best Arabidopsis Sequence Match ( AT5G55220.1 )
(BLAST)

001: MELCVISTTT TVKAINPFLP SITRRVSSRL FQSDSVLQFG GRLKKPISRP LDMSCVSRKI GFFGDFMSHG GNFRLFAAAS PAVETSVKED KLPADLKVTE
101: TVQANSSVKL SVEVPEIVCE DCYQRVLTEF MKLSKVPGFR PKTRVPENII VGFVGRQYVL RATVESILKR TLPHAMESVT GRALKDSIQI VSSFPDMEKA
201: YSKLKTLSYE VVVDVVPELK WNPEDGYKNM KVVVELGDEI DAKKACERQL RQKYKSLGAL KIVTERGLQV GDLAVVDISA TTIDEDGSTG QAIPDAESKG
301: FHFDTEEGNR LLPGFLDAII GIRAGESKSF TLVFPESWKQ ESLRGQRAQF TVDCKELFYR DLPTLDDSLA DKLLPGCTTL KEVEETLAKR CQEMEQEAKE
401: QATDNAILEQ IRKMVEVEIP QSLFEEQGRQ FYGARLLEIQ GNMKLNEDQL ASLSSQKAVN EFLETQRESI TNIIKQNIAV GDIFKRENLE FSTDELVKEV
501: ENSISEFKKH KQEFDEERVK DQVQEILEGA KVLEWLKDRA EIQYITR

Arabidopsis Description

TIGTrigger factor-like protein TIG, Chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8S9L5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.